Overview  Package  Class  Use  Tree  Deprecated  Index  Help 
 PREV   NEXT FRAMES    NO FRAMES    

Constant Field Values

Contents
com.jgoodies.*

com.jgoodies.binding.extras.ChangeTracker
public static final java.lang.String PROPERTYNAME_CHANGED "changed"

edu.iastate.*

edu.iastate.biocyc.io.AttributeFileReaderEx
final int PARSE 1
final int SEARCH 0

edu.iastate.jtm.Stemmer
public static final int ALLCAP 2
public static final int ANYWORD 3
public static final java.lang.String delimiters " .,-\";()!"
public static final int FIRSTCAP 1
public static final int NOCAP 0

edu.iastate.jtm.assistant.CitationPool
public static final int MODE_AND 0
public static final int MODE_OR 1
public static final int MODE_REPLACE 2

edu.iastate.jtm.assistant.Exporter
public static final int BIBTEX 0
public static final int ENDNOTE 2
public static final int PROCITE 1

edu.iastate.jtm.assistant.GoogleScholar
public static final int ALL_WORDS 0
public static final int AT_LEAST_ONE 4
public static final int AUTHOR 7
public static final int EXACT_PHRASE 3
public static final int PUBLICATION 8
public static final int WITHOUT 5
public static final int YEAR_FROM 9
public static final int YEAR_TO 10

edu.iastate.jtm.dic.AbstractDictionary
public static final int MATCH 2
protected static final int MAX_ENTRY_LENGTH 2000
protected static final int MAX_TOKEN_LENGTH 200
public static final int MISMATCH 0
public static final java.lang.String PARTIAL_ENTRY "partial entry"
public static final int PARTIALMATCH 1

edu.iastate.jtm.gui.Markable
public static final int ALL_MARKED 0
public static final int EMPTY 3
public static final int NONE_MARKED 2
public static final int SOME_MARKED 1

edu.iastate.jtm.gui.TableSorter
public static final int ASCEND 1
public static final int DESCEND 2
public static final int SORTABLE 0
public static final int UNSORTABLE -1

edu.iastate.jtm.gui.TableUtil
public static final int WIDTH_MAX 0
public static final int WIDTH_MIN 1
public static final int WIDTH_PREFER 2

edu.iastate.jtm.jmed.ELink
public static final java.lang.String ELINK_BASE "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?"

edu.iastate.jtm.jmed.Entrez
public static final int BOOKS 5
public static final int CANCERCHROMOSOMES 6
public static final int CDD 7
public static final int DOMAINS 8
public static final int GDS 13
public static final int GENE 9
public static final int GENOME 4
public static final int GENOMEPRJ 10
public static final int GENSAT 11
public static final int GEO 12
public static final int HOMOLOGENE 14
public static final int JOURNALS 15
public static final int MESH 16
public static final int NCBISEARCH 17
public static final int NLMCATALOG 18
public static final int NUCLEOTIDE 2
public static final int OMIM 19
public static final int PCASSAY 23
public static final int PCCOMPOUND 24
public static final int PCSUBSTANCE 25
public static final int PMC 20
public static final int POPSET 21
public static final int PROBE 22
public static final int PROTEIN 1
public static final int PUBMED 0
public static final int SNP 26
public static final int STRUCTURE 3
public static final int TAXONOMY 27
public static final int UNIGENE 28
public static final int UNISTS 29

edu.iastate.jtm.jmed.ESearch
public static final int CONNECT_FAIL -3
public static final java.lang.String ESEARCH_BASE "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?"
public static final int FETCH_LIMIT 10000
public static final int FIRST_DEFAULT 20
public static final int NOT_FOUND 0
public static final int QUERY_FAIL -2

edu.iastate.jtm.jmed.EUtility
public static final int MAX_IDS 900

edu.iastate.jtm.jmed.Limits
public static final int ABSTRACT 2
public static final int ACC 16
public static final int AFFILIATION 1
public static final int ALLFIELD 0
public static final int ASN 3
public static final int AUTHOR 2
public static final int BRIEF 20
public static final int CHR 17
public static final int CITATION 3
public static final int COUNT 0
public static final java.lang.String DEF_MINDATE "1960/01/01"
public static final int DEFAULT -1
public static final int DOCSET 21
public static final int ECRN 3
public static final int ENTREZDATE 1
public static final int EST 11
public static final int FASTA 7
public static final int FILTER 20
public static final int FLT 18
public static final int FULL 5
public static final int GB 8
public static final int GBC 9
public static final int GBWITHPARTS 10
public static final int GP 13
public static final int GPC 14
public static final int GSS 12
public static final int HTML 1
public static final int ISSUE 5
public static final int JOURNAL 4
public static final int LAST10YEAR 3650
public static final int LAST1MONTH 30
public static final int LAST1WEEK 7
public static final int LAST1YEAR 365
public static final int LAST2MONTH 60
public static final int LAST2WEEK 14
public static final int LAST2YEAR 730
public static final int LAST3MONTH 90
public static final int LAST3WEEK 21
public static final int LAST4WEEK 28
public static final int LAST5YEAR 1825
public static final int LAST6MONTH 180
public static final int LNG 18
public static final int MAJOR 7
public static final int MDATE 8
public static final int MEDLINE 4
public static final int MESH 6
public static final int NATIVE 6
public static final int PAGE 9
public static final int PDATE 10
public static final int PTYPE 11
public static final int PUBDATE 0
public static final int RSR 19
public static final int SEQID 15
public static final int SID 12
public static final int SUBHEADING 14
public static final int SUBSTANCE 13
public static final int TEXT 16
public static final int TITLE 17
public static final int TITLEABS 15
public static final int TXT 2
public static final int uid 19
public static final int UILIST 1
public static final int VOLUME 21
public static final int XML 0

edu.iastate.jtm.jmed.PubMedQuerier
public static final int CONNECT_FAIL -3
public static final int FETCH_LIMIT 10000
public static final int FIRST_DEFAULT 20
public static final int NOT_FOUND 0
public static final int QUERY_FAIL -2

edu.iastate.jtm.util.CharType
public static final int EOL -1
public static final int OTHER 0

edu.iastate.jtm.util.NameCharType
public static final int APOS 10
public static final int DIGIT 9
public static final int LEFT 21
public static final int LOWERCASE 2
public static final int MINUS 20
public static final int PLUS 19
public static final int RIGHT 22
public static final int SEPARATOR 23
public static final int UPPERCASE 1
public static final int WHITESPACE 5

edu.iastate.jtm.util.ParenFinder
public static final int LEFT 1001
public static final int RIGHT 1002

edu.iastate.jtm.util.ParenParser
public static final int LEFT 1001
public static final int RIGHT 1002

edu.iastate.jtm.util.Queue
public static final int EMPTY 0
public static final int FULL 2
public static final int SOME 1

edu.iastate.jtm.util.SlidingWindow
public static final int DASH 5
public static final int DIGIT 30
public static final int LEFT 10
public static final int LETTER 20
public static final int PUNC 6
public static final int RIGHT 11
public static final int SPACE 1

edu.iastate.jtm.util.TokenProcessor
public static final int DEL 1
public static final int DEL_LEFT 2
public static final int DEL_RIGHT 3
public static final int OPT 4
public static final int OPT_LEFT 5
public static final int OPT_RIGHT 6

edu.iastate.jtm.util.VocabularyCounter
protected static final int DF 2
protected static final int TDF 3
protected static final int TF 1

edu.iastate.metnet.StripedTable.ColorEditor
protected static final java.lang.String EDIT "edit"

edu.iastate.metnet.aracyc.AttributeFileReader
final int PARSE 1
final int SEARCH 0

edu.iastate.metnet.aracyc.AttributeFileReaderEx
final int PARSE 1
final int SEARCH 0

edu.iastate.metnet.aracyc.ConsoleApplication
protected final java.lang.String configureFile "MainWindow2.conf.xml"
protected final java.lang.String DATABASE_NODE "database"
protected final java.lang.String DBNAME_KEY "dbname"
protected final java.lang.String PASSWORD_KEY "password"
protected final java.lang.String SERVER_KEY "server"
protected final java.lang.String USER_KEY "user"

edu.iastate.metnet.birdseyeview.Annotation
public static final java.lang.String GeneType "gene"
public static final java.lang.String PolypeptideType "polypeptide"
public static final java.lang.String ProteinComplexType "protein complex"

edu.iastate.metnet.birdseyeview.BirdsEyeView
public static final int CellViewID 0
public static final java.lang.String CellViewName "Cell View"
public static final int DefaultViewID 0
public static final int GenePanelBuffer 1
public static final int GoBioProcessViewID 2
public static final java.lang.String GoBioProcessViewName "GO Biological Process View"
public static final int GoFunctionViewID 3
public static final java.lang.String GoFunctionViewName "GO Molecular Function View"
public static final java.lang.String PathwayCompartmentPrefix "pathwayCompartment."
public static final java.lang.String PathwayPrefix "pathway."
public static final int PathwayViewID 1
public static final java.lang.String PathwayViewName "Pathway View"

edu.iastate.metnet.birdseyeview.LoadController
public static final java.lang.String ExperimentalData "Experimental Data"
public static final java.lang.String ExperimentNames "Experiment Names Data"
public static final java.lang.String IntegrationData "Integrated File"
public static final java.lang.String ProbeNames "Probe Names Data"

edu.iastate.metnet.birdseyeview.goview.GoFunctionView
public static final int RootID 1960

edu.iastate.metnet.birdseyeview.goview.GoView
public static final int MaxLevel 2

edu.iastate.metnet.db.ReturnCode
public static final int RC_DUPLICATE 4
public static final int RC_INSERTED 2
public static final int RC_OK 1

edu.iastate.metnet.graphmodel.AbstractGraphMetaphor
protected static final int DEFAULT_LINE_WIDTH 1

edu.iastate.metnet.graphmodel.GraphValidity
public static final java.lang.String ERROR_ADJACENT_ENTITY "two entities are adjacent without an interaction"
public static final java.lang.String ERROR_DUPLICATE_ENTITY "two or more entities have same name, location, organism and entity type"
public static final java.lang.String ERROR_ENZYME_TYPE "an enzyme must be either polypeptide or protein complex"
public static final java.lang.String ERROR_GENE_LOCATION "gene should be in nucleus, mitochondrion or plastid"
public static final java.lang.String ERROR_INTERACTION_STRUCTURE "an interaction must have at least one substrate and at least one product"
public static final java.lang.String ERROR_NODE_USER_OBJECT "The node does not contains valid entity or interaction"
public static final java.lang.String ERROR_NOTHING "no errors"
public static final java.lang.String ERROR_ORPHAN_NODE "the node does not connect to any other nodes"
public static final java.lang.String ERROR_TRANSPORT_LOCATION "substrate and product of an trasportation must be same entity but different locations"
public static final java.lang.String WARNING_ADJACENT_INTERACTION "only catalysis and enzymatic reaction can be adjacent"
public static final java.lang.String WARNING_DUPLICATE_INTERACTION "two or more interactions have same structures"
public static final java.lang.String WARNING_NOTHING "no warnings"
public static final java.lang.String WARNING_UNKNOWN_LOCATION "the entity should have some subcellular location value"
public static final java.lang.String WARNING_UNSUPPORTED_ORGANISM "you can not edit the species data"

edu.iastate.metnet.graphmodel.GraphWalker
static final int WALK_ADJCENT 1
static final int WALK_ALL 0

edu.iastate.metnet.interfaces.MyFacadeHome
public static final java.lang.String COMP_NAME "java:comp/env/ejb/MyFacade"
public static final java.lang.String JNDI_NAME "ejb/MyFacadeHome"

edu.iastate.metnet.interfaces.MyFacadeLocalHome
public static final java.lang.String COMP_NAME "java:comp/env/ejb/MyFacadeLocal"
public static final java.lang.String JNDI_NAME "ejb/MyFacadeLocalHome"

edu.iastate.metnet.interfaces.MyMetnetServiceHome
public static final java.lang.String COMP_NAME "java:comp/env/ejb/MyMetnetService"
public static final java.lang.String JNDI_NAME "ejb/MyMetnetServiceHome"

edu.iastate.metnet.interfaces.MyMetnetServiceLocalHome
public static final java.lang.String COMP_NAME "java:comp/env/ejb/MyMetnetServiceLocal"
public static final java.lang.String JNDI_NAME "ejb/MyMetnetServiceLocalHome"

edu.iastate.metnet.interfaces.MyPaperHome
public static final java.lang.String COMP_NAME "java:comp/env/ejb/MyPaper"
public static final java.lang.String JNDI_NAME "ejb/MyPaperHome"

edu.iastate.metnet.metaomgraph.AtGeneSearch
public static final int COLUMN_COUNT 14

edu.iastate.metnet.metaomgraph.GraphFileFilter
public static final int PNG 3
public static final int PROJECT 2
public static final int TEXT 1
public static final int XML 0

edu.iastate.metnet.metaomgraph.MetaOmAnalyzer
public static final int PEARSON 1
public static final int SPEARMAN 2

edu.iastate.metnet.metaomgraph.MetaOmGraph
public static final java.lang.String ABOUT_COMMAND "show about window"
public static final java.lang.String CLOSE_PROJECT_COMMAND "close the current project"
public static final java.lang.String LOAD_INFO_COMMAND "load extended info"
public static final java.lang.String NEW_PROJECT_DELIMITED_COMMAND "New project from a delimited text file"
public static final java.lang.String NEW_PROJECT_SOFT_COMMAND "New project from a SOFT file"
public static final java.lang.String OPEN_COMMAND "Open a project"
public static final java.lang.String PROPERTIES_COMMAND "project properties"
public static final java.lang.String QUIT_COMMAND "quit"
public static final java.lang.String RECENT_PROJECT_COMMAND "open a recent project"
public static final java.lang.String SAVE_AS_COMMAND "Save as"
public static final java.lang.String SAVE_COMMAND "Save the current project"
public static final java.lang.String SHOW_TIPS_COMMAND "show tip of the day"

edu.iastate.metnet.metaomgraph.MetaOmProject
public static final java.lang.String COMPLETE_LIST "Complete List"
public static final java.lang.String DELETE_INFO_COLUMN_CAUSE "info column deleted"
public static final java.lang.String KEEP_CORRELATION_CAUSE "keep correlation"
public static final java.lang.String LIST_CREATE_CAUSE "create list"
public static final java.lang.String LIST_DELETE_CAUSE "delete list"
public static final java.lang.String LIST_RENAME_CAUSE "rename list"
public static final java.lang.String NEW_CORRELATION_CAUSE "new correlation"
public static final java.lang.String ROW_NAME_CHANGE_CAUSE "row name change"

edu.iastate.metnet.metaomgraph.MetaOmTablePanel
public static final java.lang.String ATGENESEARCH_COMMAND "atgenesearch"
public static final java.lang.String DELETE_LIST_COMMAND "delete list"
public static final java.lang.String EDIT_LIST_COMMAND "edit list"
public static final java.lang.String GRAPH_FILTERED_COMMAND "graph filter"
public static final java.lang.String GRAPH_LIST_COMMAND "graph list"
public static final java.lang.String GRAPH_SELECTED_COMMAND "graph selected"
public static final java.lang.String LIST_FROM_FILTER_COMMAND "list from filter"
public static final java.lang.String NEW_LIST_COMMAND "new list"
public static final java.lang.String PEARSON_COMMAND "pearson correlation"
public static final java.lang.String REMOVE_ALL_CORRELATIONS_COMMAND "remove all correlations"
public static final java.lang.String REMOVE_CORRELATION_COMMAND "remove correlation"
public static final java.lang.String RENAME_LIST_COMMAND "rename list"
public static final java.lang.String REPORT_COMMAND "report"
public static final java.lang.String SAVE_CORRELATION_COMMAND "save correlation"
public static final java.lang.String SPEARMAN_COMMAND "spearman correlation"
public static final java.lang.String TAIR_COMMAND "tair"

edu.iastate.metnet.metaomgraph.RandomAccessFile
public static final int CREATE 4
protected static final int defaultBufferSize 4096
public static final int READ 1
public static final int WRITE 2

edu.iastate.metnet.metaomgraph.TableSorter
public static final int ASCENDING 1
public static final int DESCENDING -1
public static final int NOT_SORTED 0

edu.iastate.metnet.metaomgraph.chart.CustomSortDialog
public static final java.lang.String CANCEL_ACTION_COMMAND "cancel"
public static final java.lang.String DELETE_SORT_ACTION_COMMAND "delete"
public static final java.lang.String LOAD_SORT_ACTION_COMMAND "load"
public static final java.lang.String MARK_ACTION_COMMAND "mark"
public static final java.lang.String OK_ACTION_COMMAND "ok"
public static final java.lang.String REMOVE_ACTION_COMMAND "remove"
public static final java.lang.String RESET_ACTION_COMMAND "reset"
public static final java.lang.String SAVE_SORT_ACTION_COMMAND "save"

edu.iastate.metnet.metaomgraph.chart.RangeSelector
public static final java.lang.String ACTION_COMMAND "A RaNgE hAs BeEn SeLeCtEd"

edu.iastate.metnet.metaomgraph.utils.Utils
public static final int AFFY25K 3
public static final int AFFY8K 2
public static final int LOCUS 1
public static final int NONE -1

edu.iastate.metnet.soft.RandomAccessFile
public static final int CREATE 4
protected static final int defaultBufferSize 4096
public static final int READ 1
public static final int WRITE 2

edu.iastate.metnet.ui.AddInteractionForm
final int COLUMN_COEFFICIENT 3
final int COLUMN_ENTITYTYPE 1
final int COLUMN_LOCATION 2
final int COLUMN_NAME 0

edu.iastate.metnet.ui.AddPathwayForm
final int both 1
final int center 10

edu.iastate.metnet.ui.Blip
public static final int ANGLE 36
public static final int DELAY 50

edu.iastate.metnet.ui.CategoryEditForm
static final int CMD_CATEGORY_COPY 6
static final int CMD_CATEGORY_CREATE 3
static final int CMD_CATEGORY_MOVE 1
static final int CMD_CATEGORY_RENAME 2
static final int CMD_PATHWAY_ADD 4
static final int CMD_PATHWAY_MOVE 5

edu.iastate.metnet.ui.HelpWindow
final int both 1
final int center 10

edu.iastate.metnet.ui.OverviewPanel
static final int PANEL_BUFFER 2

edu.iastate.metnet.ui.edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder
static final int DECORATION_SIZE 4
public final int LEFT_VERTICAL 1
public final int LOWER_HORIZONTAL 8
public final int NE_CORNER 6
public final int NW_CORNER 5
public final int RIGHT_VERTICAL 2
public final int SE_CORNER 10
public final int SW_CORNER 9
public final int UPPER_HORIZONTAL 4

edu.iastate.metnet.ui.PathwayEditor
static final int MENU_AA_GRAPH_QUERY 16
static final int MENU_ALIGN_ARACYC 4
static final int MENU_ALL_COMPARE 62
static final int MENU_ALL_GRAPH_QUERY 56
static final int MENU_EA_GRAPH_QUERY 8
static final int MENU_ES_GRAPH_QUERY 32
static final int MENU_HIGHLIGHT_DELTA 2
static final int MENU_ZERO_DEGREE 0

edu.iastate.metnet.ui.Splash
final int both 1
final int center 10

edu.iastate.reload.ui.NetworkEditForm
public static final int EDGE_CREATION 1
public static final int NODE_CREATION 2
public static final int NOTHING_CREATION 0

edu.iastate.reload.ui.OverviewPanel
static final int PANEL_BUFFER 2

edu.iastate.reload.ui.edu.iastate.reload.ui.OverviewPanel.PannerViewfinder
static final int DECORATION_SIZE 4
public final int LEFT_VERTICAL 1
public final int LOWER_HORIZONTAL 8
public final int NE_CORNER 6
public final int NW_CORNER 5
public final int RIGHT_VERTICAL 2
public final int SE_CORNER 10
public final int SW_CORNER 9
public final int UPPER_HORIZONTAL 4

fcmodeler.pathbinder.*

fcmodeler.pathbinder.FilterUpdater
public static final java.lang.String locSql "INSERT pb_loc2pmid VALUES "
public static final java.lang.String taxSql "INSERT pb_tax2pmid VALUES "

fcmodeler.pathbinder.MedLeaseClient
public static final java.lang.String BASEGZ "/nlmdata/.medleasebaseline/gz"
public static final java.lang.String BASEZIP "/nlmdata/.medleasebaseline/zip"
public static final java.lang.String MONTHLY "/nlmdata/.medlease/gz"
public static final java.lang.String SAMPLE "/nlmdata/sample/medline"

Overview  Package  Class  Use  Tree  Deprecated  Index  Help 
 PREV   NEXT FRAMES    NO FRAMES