edu.iastate.jtm.assistant
Class CitationPool

java.lang.Object
  javax.swing.table.AbstractTableModel
      edu.iastate.jtm.assistant.CitationPool

All Implemented Interfaces:

Markable, Monitorable, Queue, java.io.Serializable, javax.swing.table.TableModel

public class CitationPool
extends javax.swing.table.AbstractTableModel
implements Markable, Monitorable, Queue

Author:

Jing Ding edu.iastate.jtm.browser jtm

See Also:

Serialized Form

Field Summary

static int	MODE_AND
static int	MODE_OR
static int	MODE_REPLACE

Fields inherited from class javax.swing.table.AbstractTableModel

listenerList

Fields inherited from interface edu.iastate.jtm.gui.Markable

ALL_MARKED, EMPTY, NONE_MARKED, SOME_MARKED

Fields inherited from interface edu.iastate.jtm.util.Queue

EMPTY, FULL, SOME

Constructor Summary

CitationPool(int cap)

Method Summary

void	addCitationListener(CitationListener cl)
void	addMarkListener(MarkListener ml)
boolean	addPmid(java.lang.String pmid, boolean mark, int mode)
void	addQueueListener(QueueListener ql)
int	addSearchResult(PubMedQuerier querier, int mode)
int	export(java.io.File of, CitationManager cm)
void	fireCitationUpdate(int row)
void	fireMarkChanged()
void	fireQueueChanged()
MedCitation	getCitation(int row)
java.lang.Class	getColumnClass(int col)
int	getColumnCount()
java.lang.String	getColumnName(int col)
org.dom4j.Element	getFullCitation(int row)
java.lang.String	getMessage()
double	getProgress()
int	getRowCount()
java.lang.Object	getValueAt(int row, int col)
boolean	isCellEditable(int row, int col)
boolean	isDeterministic()
boolean	isFinished()
boolean	isMonitorable()
boolean	isRunning()
void	markAll()
void	markNone()
int	markStatus()
int	open(java.io.File fromFile, int mode)
int	removeCitation(int row)
void	removeCitationListener(CitationListener cl)
void	removeMarkListener(MarkListener ml)
void	removeQueueListener(QueueListener ql)
int	removeUnmarked()
void	save(java.io.File toFile)
protected void	setMessage(java.lang.String m)
void	setMonitorable(boolean m)
protected void	setProgress(double p)
void	setStop(boolean stop)
void	setValueAt(java.lang.Object value, int row, int col)
int	status()

Methods inherited from class javax.swing.table.AbstractTableModel

addTableModelListener, findColumn, fireTableCellUpdated, fireTableChanged, fireTableDataChanged, fireTableRowsDeleted, fireTableRowsInserted, fireTableRowsUpdated, fireTableStructureChanged, getListeners, getTableModelListeners, removeTableModelListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MODE_AND

public static final int MODE_AND

See Also:

Constant Field Values

MODE_OR

public static final int MODE_OR

See Also:

Constant Field Values

MODE_REPLACE

public static final int MODE_REPLACE

See Also:

Constant Field Values

Constructor Detail

CitationPool

public CitationPool(int cap)
             throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

Method Detail

setStop

public void setStop(boolean stop)

addPmid

public boolean addPmid(java.lang.String pmid,
                       boolean mark,
                       int mode)

markAll

public void markAll()

Specified by:

markAll in interface Markable

markNone

public void markNone()

Specified by:

markNone in interface Markable

markStatus

public int markStatus()

Specified by:

markStatus in interface Markable

addMarkListener

public void addMarkListener(MarkListener ml)

Specified by:

addMarkListener in interface Markable

removeMarkListener

public void removeMarkListener(MarkListener ml)

Specified by:

removeMarkListener in interface Markable

addQueueListener

public void addQueueListener(QueueListener ql)

removeQueueListener

public void removeQueueListener(QueueListener ql)

fireMarkChanged

public void fireMarkChanged()

Specified by:

fireMarkChanged in interface Markable

fireQueueChanged

public void fireQueueChanged()

removeCitation

public int removeCitation(int row)

removeUnmarked

public int removeUnmarked()

export

public int export(java.io.File of,
                  CitationManager cm)
           throws org.dom4j.DocumentException,
                  java.io.IOException

Throws:

org.dom4j.DocumentException

java.io.IOException

save

public void save(java.io.File toFile)
          throws java.io.IOException

Throws:

java.io.IOException

open

public int open(java.io.File fromFile,
                int mode)
         throws java.io.IOException

Throws:

java.io.IOException

addSearchResult

public int addSearchResult(PubMedQuerier querier,
                           int mode)
                    throws org.dom4j.DocumentException,
                           java.io.IOException

Throws:

org.dom4j.DocumentException

java.io.IOException

getCitation

public MedCitation getCitation(int row)

getFullCitation

public org.dom4j.Element getFullCitation(int row)
                                  throws org.dom4j.DocumentException,
                                         java.io.IOException

Throws:

org.dom4j.DocumentException

java.io.IOException

addCitationListener

public void addCitationListener(CitationListener cl)

removeCitationListener

public void removeCitationListener(CitationListener cl)

fireCitationUpdate

public void fireCitationUpdate(int row)

getRowCount

public int getRowCount()

Specified by:

getRowCount in interface javax.swing.table.TableModel

getValueAt

public java.lang.Object getValueAt(int row,
                                   int col)

Specified by:

getValueAt in interface javax.swing.table.TableModel

setValueAt

public void setValueAt(java.lang.Object value,
                       int row,
                       int col)

Specified by:

setValueAt in interface javax.swing.table.TableModel

Overrides:

setValueAt in class javax.swing.table.AbstractTableModel

getColumnCount

public int getColumnCount()

Specified by:

getColumnCount in interface javax.swing.table.TableModel

getColumnClass

public java.lang.Class getColumnClass(int col)

Specified by:

getColumnClass in interface javax.swing.table.TableModel

Overrides:

getColumnClass in class javax.swing.table.AbstractTableModel

getColumnName

public java.lang.String getColumnName(int col)

Specified by:

getColumnName in interface javax.swing.table.TableModel

Overrides:

getColumnName in class javax.swing.table.AbstractTableModel

isCellEditable

public boolean isCellEditable(int row,
                              int col)

Specified by:

isCellEditable in interface javax.swing.table.TableModel

Overrides:

isCellEditable in class javax.swing.table.AbstractTableModel

getMessage

public java.lang.String getMessage()

Specified by:

getMessage in interface Monitorable

Returns:

getProgress

public double getProgress()

Specified by:

getProgress in interface Monitorable

Returns:

setMessage

protected void setMessage(java.lang.String m)

setProgress

protected void setProgress(double p)

setMonitorable

public void setMonitorable(boolean m)

Specified by:

setMonitorable in interface Monitorable

isMonitorable

public boolean isMonitorable()

Specified by:

isMonitorable in interface Monitorable

isDeterministic

public boolean isDeterministic()

Specified by:

isDeterministic in interface Monitorable

Returns:

isFinished

public boolean isFinished()

Specified by:

isFinished in interface Monitorable

Returns:

isRunning

public boolean isRunning()

Specified by:

isRunning in interface Monitorable

Returns:

status

public int status()

Specified by:

status in interface Queue