Package edu.iastate.jtm.jmed

Interface Summary
EUtility.Processor A processor is responsible for processing the response of a service.
 

Class Summary
CitationManager  
EFetch  
ELink  
Entrez Entrez database names.
EPost  
ESearch  
EUtility An abstract superclass for eSearch, eFetch, eLink, ...
It deals with the common issues for all services, such as min request interval, response parsing, service job queueing...
Subclasses (ESearch, ELink, EFetch, etc.) focus on dealing with user input and output of specific services.
In replace of PubMedQuerier, PubMedFetcher, PubMedTimer.
Limits Encapsulate PubMed interface's limits.
MedCitation  
MedlineParser Extract citation info from Medline/PubMed XML files.
MeshDescriptor  
PubMedFetcher Retrive abstracts from Medline given a list of PMIDs or last query's history.
PubMedQuerier Get number of hits and/or PMID list from PubMed.
PubMedSampler Randomly sample PubMed files.
PubMedTimer Keep track of time intervals between two consective PubMed inqueries.
Query  
Query.CompositeTerm  
Query.Field  
Query.Operator  
Query.SimpleTerm  
Query.Term  
QueryParser  
StreamXMLParser Parse large XML files in a stream-like mode.
UmlsQueryClient A client utilizing UMLS server's xml query facility.
UmlsSocketClient A client utilizing UMLS server's socket query facility.