|
||||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | |||||||||
See:
Description
| Interface Summary | |
|---|---|
| IAracycEntity | |
| IAracycEntityWithLocation | |
| IAracycFileReader | the interface to read the aracyc dump file |
| Class Summary | |
|---|---|
| AbstractAracycEntity | |
| AbstractAracycEntityWithLocation | |
| AbstractAracycFileReader | abstract reader which implements read line stuff |
| AracycClass | specialized class |
| AracycCompound | |
| AracycEntity | data object to match Blockunit/Entity |
| AracycImporter | dispatcher to other file reader and importer the zip file format |
| AracycInteraction | data object for aracyc interaction |
| AttributeFileReader | read in the attribute like file from aracyc |
| AttributeFileReaderEx | same as AttributeFileReader except implementing the data structure by Map of MultiMap |
| ChangeName | turn the name in our database to the common name |
| ChebiImporter | import data from chebi ontology into chebi_* tables notice the data does not have same order with its create table sql. |
| ChebiNameConverter | mapping the blockunit and entity name to chebi name. |
| ClassesDatReader | |
| ClassTree | |
| CompoundsDatReader | contain keyword: |
| ConsoleApplication | common task for console application the subclass should implement like MapPubchemName.java |
| GenericTree | tree structure |
| GraphStatistics | run the program by |
| InteractionFix | |
| ScriptSink | |
| TabularFileReader | |
| TabularFileReaderEx | same as TabularFileReader except implementing the data structure by Map of MultiMap |
| XMLRPCClient | |
importing the Aracyc's Biocyc-format flatfiles
|
||||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | |||||||||