edu.iastate.metnet.dao
Class AbstractPathwayElementNode

java.lang.Object
  edu.iastate.metnet.dao.AbstractPathwayElementNode

All Implemented Interfaces:

PathwayElementNode, java.io.Serializable

Direct Known Subclasses:

EntityNode, InteractionNode

public class AbstractPathwayElementNode
extends java.lang.Object
implements PathwayElementNode, java.io.Serializable

pathway element node.

Author:

Jie Li

See Also:

Serialized Form

Field Summary

(package private) java.lang.String	biologicalType the biological type
(package private) java.lang.Integer	blockId the blockid of the blockunit
(package private) java.lang.String	guid guid for the object, since blockid is not enough for multi-pathway cases
(package private) java.lang.String	location the subcellular location
(package private) java.lang.String	name the name

Constructor Summary

AbstractPathwayElementNode()

Method Summary

void	addDownstreamGuid(java.lang.String guid) add a downstream node
void	addDownstreamNodeId(java.lang.Integer nodeId) add a downstream node
void	addUpstreamGuid(java.lang.String guid) add an upstream node
void	addUpstreamNodeId(java.lang.Integer nodeId) add an upstream node
java.lang.String	getBiologicalType() get the biological type for the data instance
java.lang.Integer	getBlockId() the blockid of the blockunit (version)
java.util.Set	getDownstreamGuidSet() get the outgoing node id
java.util.Set	getDownstreamNodeIdSet() get the outgoing node id
java.lang.String	getGuid()
java.lang.String	getLocation() get the subcellular location
java.lang.String	getName() get the name of the data instance
java.util.Set	getUpstreamGuidSet() get the incoming node id
java.util.Set	getUpstreamNodeIdSet() get the incoming node id
void	setBiologicalType(java.lang.String biologicalType)
void	setBlockId(java.lang.Integer blockId) set the blockid of the blockunit (version)
void	setLocation(java.lang.String location)
void	setName(java.lang.String name)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

guid

java.lang.String guid

guid for the object, since blockid is not enough for multi-pathway cases

blockId

java.lang.Integer blockId

the blockid of the blockunit

name

java.lang.String name

the name

biologicalType

java.lang.String biologicalType

the biological type

location

java.lang.String location

the subcellular location

Constructor Detail

AbstractPathwayElementNode

public AbstractPathwayElementNode()

Method Detail

getBlockId

public java.lang.Integer getBlockId()

Description copied from interface: PathwayElementNode

the blockid of the blockunit (version)

Specified by:

getBlockId in interface PathwayElementNode

Returns:

the blockid

setBlockId

public void setBlockId(java.lang.Integer blockId)

Description copied from interface: PathwayElementNode

set the blockid of the blockunit (version)

Specified by:

setBlockId in interface PathwayElementNode

getDownstreamNodeIdSet

public java.util.Set getDownstreamNodeIdSet()

Description copied from interface: PathwayElementNode

get the outgoing node id

Specified by:

getDownstreamNodeIdSet in interface PathwayElementNode

Returns:

Returns the downstreamNodeIdSet.

getUpstreamNodeIdSet

public java.util.Set getUpstreamNodeIdSet()

Description copied from interface: PathwayElementNode

get the incoming node id

Specified by:

getUpstreamNodeIdSet in interface PathwayElementNode

Returns:

Returns the upstreamNodeIdSet.

addDownstreamNodeId

public void addDownstreamNodeId(java.lang.Integer nodeId)

add a downstream node

Specified by:

addDownstreamNodeId in interface PathwayElementNode

Parameters:

nodeId - the node id to be added

addDownstreamGuid

public void addDownstreamGuid(java.lang.String guid)

add a downstream node

Specified by:

addDownstreamGuid in interface PathwayElementNode

Parameters:

nodeId - the node id to be added

addUpstreamNodeId

public void addUpstreamNodeId(java.lang.Integer nodeId)

add an upstream node

Specified by:

addUpstreamNodeId in interface PathwayElementNode

Parameters:

nodeId - the node id to be added

addUpstreamGuid

public void addUpstreamGuid(java.lang.String guid)

add an upstream node

Specified by:

addUpstreamGuid in interface PathwayElementNode

Parameters:

nodeId - the node id to be added

getBiologicalType

public java.lang.String getBiologicalType()

Description copied from interface: PathwayElementNode

get the biological type for the data instance

Specified by:

getBiologicalType in interface PathwayElementNode

Returns:

Returns the biologicalType.

setBiologicalType

public void setBiologicalType(java.lang.String biologicalType)

Parameters:

biologicalType - The biologicalType to set.

getName

public java.lang.String getName()

Description copied from interface: PathwayElementNode

get the name of the data instance

Specified by:

getName in interface PathwayElementNode

Returns:

Returns the name.

setName

public void setName(java.lang.String name)

Parameters:

name - The name to set.

getLocation

public java.lang.String getLocation()

Description copied from interface: PathwayElementNode

get the subcellular location

Specified by:

getLocation in interface PathwayElementNode

Returns:

Returns the location.

setLocation

public void setLocation(java.lang.String location)

Parameters:

location - The location to set.

getGuid

public java.lang.String getGuid()

Specified by:

getGuid in interface PathwayElementNode

Returns:

Returns the guid.

getDownstreamGuidSet

public java.util.Set getDownstreamGuidSet()

Description copied from interface: PathwayElementNode

get the outgoing node id

Specified by:

getDownstreamGuidSet in interface PathwayElementNode

Returns:

Returns the downStreamGuidSet.

getUpstreamGuidSet

public java.util.Set getUpstreamGuidSet()

Description copied from interface: PathwayElementNode

get the incoming node id

Specified by:

getUpstreamGuidSet in interface PathwayElementNode

Returns:

Returns the upStreamGuidSet.