edu.iastate.metnet.dao
Class MetnetInteraction

java.lang.Object
  edu.iastate.metnet.dao.MetnetBlockUnit
      edu.iastate.metnet.dao.MetnetInteraction

All Implemented Interfaces:

IMetnetBlockUnit, java.io.Serializable

public class MetnetInteraction
extends MetnetBlockUnit

interaction nodes in the graph, should handle catalysis secifically

Since:

6/17/04

Author:

Jie Li

See Also:

Serialized Form

Field Summary

protected java.util.Set	leftPart left part's blockid as Integer
protected java.util.Set	rightPart right part's blockid as Integer

Fields inherited from class edu.iastate.metnet.dao.MetnetBlockUnit

blockunit, buffer, ID, logger

Constructor Summary

MetnetInteraction()
default constructor

MetnetInteraction(Blockunit blockunit)

Method Summary

java.lang.String	getConfidence()
java.lang.String	getEC()
java.util.Set	getEdgeSet()
java.lang.String	getEnzyme()
java.lang.String	getInteractionType()
java.lang.String	getKi()
java.lang.String	getKm()
java.util.Set	getLeftPart()
java.lang.String	getProReversal()
java.util.Set	getRightPart()
java.lang.String	getStrength()
java.lang.String	getSubtype()
java.lang.String	getTimescale()
java.util.Set	getVertexSet()
java.lang.String	getVmax()
boolean	isPropertyChanged() detect if the content is changed or not.
boolean	isStructureChanged() interaction is only determined by the structure, so if some other properties are changed, the credit still goes to original user and source
protected void	setLeftPart()
protected void	setRightPart()
java.lang.String	toString() do not display anything in the JGraph

Methods inherited from class edu.iastate.metnet.dao.MetnetBlockUnit

getAracycID, getBlockunit, getBuffer, getDate, getId, getID, getLocation, getName, getOrganism, getSource, getType, getUsername, setBlockunit, setID

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

leftPart

protected java.util.Set leftPart

left part's blockid as Integer

rightPart

protected java.util.Set rightPart

right part's blockid as Integer

Constructor Detail

MetnetInteraction

public MetnetInteraction()

default constructor

MetnetInteraction

public MetnetInteraction(Blockunit blockunit)

Method Detail

getEdgeSet

public java.util.Set getEdgeSet()

getVertexSet

public java.util.Set getVertexSet()

getLeftPart

public java.util.Set getLeftPart()

getRightPart

public java.util.Set getRightPart()

isStructureChanged

public boolean isStructureChanged()

interaction is only determined by the structure, so if some other properties are changed, the credit still goes to original user and source

Returns:

true if content is changed

isPropertyChanged

public boolean isPropertyChanged()

detect if the content is changed or not. The user editable properties include interaction type, direction, confidence, reference and comment.

Specified by:

isPropertyChanged in interface IMetnetBlockUnit

Specified by:

isPropertyChanged in class MetnetBlockUnit

Returns:

true if changed, false if not

setLeftPart

protected void setLeftPart()

setRightPart

protected void setRightPart()

getInteractionType

public java.lang.String getInteractionType()

getEC

public java.lang.String getEC()

getConfidence

public java.lang.String getConfidence()

getTimescale

public java.lang.String getTimescale()

getProReversal

public java.lang.String getProReversal()

getStrength

public java.lang.String getStrength()

getEnzyme

public java.lang.String getEnzyme()

getSubtype

public java.lang.String getSubtype()

getVmax

public java.lang.String getVmax()

getKm

public java.lang.String getKm()

getKi

public java.lang.String getKi()

toString

public java.lang.String toString()

do not display anything in the JGraph

Overrides:

toString in class MetnetBlockUnit