edu.iastate.metnet.launch
Class LaunchMetNet

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      edu.iastate.metnet.launch.LaunchMetNet

All Implemented Interfaces:

java.awt.event.MouseListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class LaunchMetNet
extends javax.swing.JFrame
implements java.awt.event.MouseListener

Main class for MetNet, displaying the launcher window.

Author:

Mohammed Alabsi

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

javax.swing.JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

static DataThread	dataThread
static ExploRaseThread	exploRaseThread

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

LaunchMetNet()

Method Summary

boolean	confirmQuit() Methods ask for a confirmation from user whether to close the platform or not.
void	exit() Method to exist the close the entire suite.
static BirdsEyeView	getBirdsEyeView()
static javax.swing.JFrame	getBirdsEyeViewFrame()
static java.awt.Container	getContainer()
static MainWindow2	getCuratorToolWindow()
static DataManager	getDataManager()
javax.swing.JMenuItem	getDocBevItem()
javax.swing.JMenuItem	getDocCytoItem()
javax.swing.JMenu	getDocMenu()
javax.swing.JMenuItem	getDocMogItem()
javax.swing.JMenuItem	getDocPbItem()
javax.swing.JMenuItem	getDocPumaItem()
javax.swing.JMenuItem	getFileExitItem()
javax.swing.JMenuItem	getHelpAboutItem()
static MetaOmGraph	getMetaOmGraph()
javax.swing.JMenuItem	getOpenBevItem()
javax.swing.JMenuItem	getOpenCytoItem()
javax.swing.JMenuItem	getOpenMogItem()
javax.swing.JMenuItem	getOpenPbItem()
javax.swing.JMenuItem	getOpenPumaItem()
static PbFrame	getPathBinder()
static java.util.Hashtable	getPathwayGeneTable()
static PubMedAssistant	getPubMed()
static boolean	isCytoscape()
static void	main(java.lang.String[] args)
void	mouseClicked(java.awt.event.MouseEvent e)
void	mouseEntered(java.awt.event.MouseEvent e)
void	mouseExited(java.awt.event.MouseEvent e)
void	mousePressed(java.awt.event.MouseEvent e)
void	mouseReleased(java.awt.event.MouseEvent e)
static void	setBirdsEyeView(BirdsEyeView birdsEyeView)
static void	setBirdsEyeViewFrame(javax.swing.JFrame frame)
void	setContainer(java.awt.Container c)
static void	setCuratorToolWindow(MainWindow2 curatorToolWindow)
static void	setCytoscape(boolean flag)
static void	setDataManager(DataManager dataManager)
void	setDocBevItem(javax.swing.JMenuItem docBevItem)
void	setDocCytoItem(javax.swing.JMenuItem docCytoItem)
void	setDocMenu(javax.swing.JMenu docMenu)
void	setDocMogItem(javax.swing.JMenuItem docMogItem)
void	setDocPbItem(javax.swing.JMenuItem docPbItem)
void	setDocPumaItem(javax.swing.JMenuItem docPumaItem)
void	setFileExitItem(javax.swing.JMenuItem fileExitItem)
void	setHelpAboutItem(javax.swing.JMenuItem helpAboutItem)
static void	setMetaOmGraph(MetaOmGraph mog)
void	setOpenBevItem(javax.swing.JMenuItem openBevItem)
void	setOpenCytoItem(javax.swing.JMenuItem openCytoItem)
void	setOpenMogItem(javax.swing.JMenuItem openMogItem)
void	setOpenPbItem(javax.swing.JMenuItem openPbItem)
void	setOpenPumaItem(javax.swing.JMenuItem openPumaItem)
static void	setPathBinder(PbFrame binder)
static void	setPathwayGeneTable(java.util.Hashtable pathwayGeneTable)
static void	setPubMed(PubMedAssistant pubMed)

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update

Methods inherited from class java.awt.Frame

addNotify, finalize, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setAlwaysOnTop, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationByPlatform, setLocationRelativeTo, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

exploRaseThread

public static ExploRaseThread exploRaseThread

dataThread

public static DataThread dataThread

Constructor Detail

LaunchMetNet

public LaunchMetNet()

Method Detail

getPathwayGeneTable

public static java.util.Hashtable getPathwayGeneTable()

setPathwayGeneTable

public static void setPathwayGeneTable(java.util.Hashtable pathwayGeneTable)

main

public static void main(java.lang.String[] args)

exit

public void exit()

Method to exist the close the entire suite.

confirmQuit

public boolean confirmQuit()

Methods ask for a confirmation from user whether to close the platform or not.

Returns:

users response

getBirdsEyeViewFrame

public static javax.swing.JFrame getBirdsEyeViewFrame()

Returns:

Returns the birdsEyeView.

setBirdsEyeViewFrame

public static void setBirdsEyeViewFrame(javax.swing.JFrame frame)

Parameters:

birdsEyeView - The birdsEyeView to set.

getMetaOmGraph

public static MetaOmGraph getMetaOmGraph()

Returns:

Returns the metaOmGraph.

setMetaOmGraph

public static void setMetaOmGraph(MetaOmGraph mog)

Parameters:

metaOmGraph - The metaOmGraph to set.

getBirdsEyeView

public static BirdsEyeView getBirdsEyeView()

Returns:

Returns the birdsEyeView.

setBirdsEyeView

public static void setBirdsEyeView(BirdsEyeView birdsEyeView)

Parameters:

birdsEyeView - The birdsEyeView to set.

getPathBinder

public static PbFrame getPathBinder()

Returns:

Returns the pathBinder.

setPathBinder

public static void setPathBinder(PbFrame binder)

Parameters:

binder - The pathBinder to set.

getPubMed

public static PubMedAssistant getPubMed()

Returns:

Returns the pubMed.

setPubMed

public static void setPubMed(PubMedAssistant pubMed)

Parameters:

pubMed - The pubMed to set.

isCytoscape

public static boolean isCytoscape()

Returns:

Returns the cytoscape.

setCytoscape

public static void setCytoscape(boolean flag)

Parameters:

cytoscape - The cytoscape to set.

getDataManager

public static DataManager getDataManager()

Returns:

Returns the dataManager.

setDataManager

public static void setDataManager(DataManager dataManager)

Parameters:

dataManager - The dataManager to set.

getContainer

public static java.awt.Container getContainer()

Returns:

Returns the c.

setContainer

public void setContainer(java.awt.Container c)

Parameters:

c - The c to set.

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Specified by:

mouseExited in interface java.awt.event.MouseListener

getOpenBevItem

public javax.swing.JMenuItem getOpenBevItem()

setOpenBevItem

public void setOpenBevItem(javax.swing.JMenuItem openBevItem)

getOpenCytoItem

public javax.swing.JMenuItem getOpenCytoItem()

setOpenCytoItem

public void setOpenCytoItem(javax.swing.JMenuItem openCytoItem)

getOpenMogItem

public javax.swing.JMenuItem getOpenMogItem()

setOpenMogItem

public void setOpenMogItem(javax.swing.JMenuItem openMogItem)

getOpenPbItem

public javax.swing.JMenuItem getOpenPbItem()

setOpenPbItem

public void setOpenPbItem(javax.swing.JMenuItem openPbItem)

getOpenPumaItem

public javax.swing.JMenuItem getOpenPumaItem()

setOpenPumaItem

public void setOpenPumaItem(javax.swing.JMenuItem openPumaItem)

getFileExitItem

public javax.swing.JMenuItem getFileExitItem()

setFileExitItem

public void setFileExitItem(javax.swing.JMenuItem fileExitItem)

getHelpAboutItem

public javax.swing.JMenuItem getHelpAboutItem()

setHelpAboutItem

public void setHelpAboutItem(javax.swing.JMenuItem helpAboutItem)

getDocBevItem

public javax.swing.JMenuItem getDocBevItem()

setDocBevItem

public void setDocBevItem(javax.swing.JMenuItem docBevItem)

getDocCytoItem

public javax.swing.JMenuItem getDocCytoItem()

setDocCytoItem

public void setDocCytoItem(javax.swing.JMenuItem docCytoItem)

getDocMenu

public javax.swing.JMenu getDocMenu()

setDocMenu

public void setDocMenu(javax.swing.JMenu docMenu)

getDocMogItem

public javax.swing.JMenuItem getDocMogItem()

setDocMogItem

public void setDocMogItem(javax.swing.JMenuItem docMogItem)

getDocPbItem

public javax.swing.JMenuItem getDocPbItem()

setDocPbItem

public void setDocPbItem(javax.swing.JMenuItem docPbItem)

getDocPumaItem

public javax.swing.JMenuItem getDocPumaItem()

setDocPumaItem

public void setDocPumaItem(javax.swing.JMenuItem docPumaItem)

getCuratorToolWindow

public static MainWindow2 getCuratorToolWindow()

setCuratorToolWindow

public static void setCuratorToolWindow(MainWindow2 curatorToolWindow)