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| Interface Summary | |
|---|---|
| XMLizable | |
| Class Summary | |
|---|---|
| AboutFrame | Frame that displays when user chooses Help->About. |
| AnimatedSwingWorker | This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread. |
| AtGeneSearch | |
| CheckBoxHandler | |
| ComponentToImage | |
| CorrelationCalc | Calculates Pearson Correlations for sets of data. |
| CorrelationValue | Enables the analyzation panel to display results as percentages, but still sort the table using doubles. |
| CreateListFrame | JInternalFrame that handles list creation for MetaOmGraph. |
| DualListPanel | A panel with two lists that allows you to move values between them. |
| DualTablePanel | |
| ExploRaseBoxHandler | |
| ExploRaseFrame | |
| ExploRaseSubmitListener | |
| ExtendedInfoTree | Class for storing the extended information of a MetaOmProject. |
| ExtendedInfoTreePanel | A JPanel that contains a vertically-split JSplitPane. |
| FilterableTableModel | |
| GeneList | |
| GraphFileFilter | File filter used in MetaOmGraph file chooser dialogs. |
| ImportListDialog | A modal JDialog that's used for importing rows into a list. |
| ListPanel | |
| ListTable | |
| ListTransferHandler | |
| ListTransferHandler.DraggableRows | |
| ListTree | |
| ListTree.DraggableNode | |
| MenuButton | A JButton that displays a JPopupMenu beneath it when activated. |
| MetaOmAnalyzer | |
| MetaOmGraph | The main class of the MetaOmGraph. |
| MetaOmGraph.NewProjectWorker | Worker that constructs a new project. |
| MetaOmHelpListener | |
| MetaOmProject | Class used for dealing with large data sets. |
| MetaOmTablePanel | A JPanel for displaying information related to a
MetaOmProject, and accessing many of MetaOmGraph's functions. |
| MetaOmTips | |
| MetaOmTips.MetaOmShowTipsChoice | |
| NewProjectDialog | |
| PathwaySelectionFrame | |
| PathwaySubmitListener | |
| PolygonPanel | |
| PolygonPanel.BouncingPolygon | |
| ProjectPropertiesPanel | |
| RandomAccessFile | A buffered drop-in replacement for java.io.RandomAccessFile. |
| ScrollingTexturePanel | |
| ServiceTest | |
| SimpleChipAnimationPanel | |
| SimpleModalMaker | If you make a Dialog or JDialog modal, it will block ALL frames running in the current application context. |
| SortableData | Class for sorting data in ascending or descending order while retaining information about the data's original order. |
| SwingWorker | This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread. |
| TableSorter | |
| TreeSearcher | Searches a tree rooted at a DefaultMutableTreeNode. |
| TreeSearcher.Query | Specifies a search for a TreeSearcher object. |
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