A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

J

jarOpener - Static variable in class edu.iastate.jtm.assistant.Controller

JarResources - Class in edu.iastate.jtm.util

JarResources: JarResources maps all resources included in a Zip or Jar file.

JarResources(String) - Constructor for class edu.iastate.jtm.util.JarResources

creates a JarResources.

javax.swing.plaf.metal - package javax.swing.plaf.metal

JCategoryGraph - Class in edu.iastate.metnet.graphmodel

JCategoryGraph(GraphModel) - Constructor for class edu.iastate.metnet.graphmodel.JCategoryGraph

constructor

JDBCComboModel - Class in edu.iastate.metnet.model

general adpater between JDBC and JComboxModel

JDBCComboModel(ResultSet, int) - Constructor for class edu.iastate.metnet.model.JDBCComboModel

construct the table model from the column of the result set

JDBCComboModel(ResultSet, String) - Constructor for class edu.iastate.metnet.model.JDBCComboModel

construct the table model from the column of the result set

JDBCComboModel(ResultSet) - Constructor for class edu.iastate.metnet.model.JDBCComboModel

construct the table model from the column of the result set.

JGraphEncoder - Class in edu.iastate.metnet.graphmodel

create Dot format file to describe the graph data in memory.

JGraphEncoder() - Constructor for class edu.iastate.metnet.graphmodel.JGraphEncoder

JGraphParallelEdgeRouter - Class in edu.iastate.reload.ui

JID - Static variable in class edu.iastate.jtm.jmed.Query.Field

JInputGraph - Class in edu.iastate.metnet.graphmodel

JInputGraph() - Constructor for class edu.iastate.metnet.graphmodel.JInputGraph

default constructor

JInputGraph(GraphModel) - Constructor for class edu.iastate.metnet.graphmodel.JInputGraph

constructor

JInputGraph(GraphModel, BasicMarqueeHandler) - Constructor for class edu.iastate.metnet.graphmodel.JInputGraph

constructor

JInputGraph(GraphModel, GraphLayoutCache) - Constructor for class edu.iastate.metnet.graphmodel.JInputGraph

constructor

JInputGraph(GraphModel, GraphLayoutCache, BasicMarqueeHandler) - Constructor for class edu.iastate.metnet.graphmodel.JInputGraph

constructor

jLabel1 - Variable in class edu.iastate.metnet.ui.WaitingDialog

JMetaphorGraph - Class in edu.iastate.metnet.graphmodel

extend the JGraph by applying the metaphor description based on the content of the pathway

JMetaphorGraph() - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph

default constructor

JMetaphorGraph(GraphModel) - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph

constructor

JMetaphorGraph(GraphModel, boolean) - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph

constructor

JMetaphorGraph(GraphModel, BasicMarqueeHandler) - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph

constructor

JMetaphorGraph(GraphModel, GraphLayoutCache) - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph

constructor

JMetaphorGraph(GraphModel, GraphLayoutCache, BasicMarqueeHandler) - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph

constructor

JMetaphorGraph.EditorGraphUI - Class in edu.iastate.metnet.graphmodel

Definition of the custom GraphUI.

JMetaphorGraph.EditorGraphUI() - Constructor for class edu.iastate.metnet.graphmodel.JMetaphorGraph.EditorGraphUI

JMultilineLabel - Class in edu.iastate.metnet.dataManager

Class that represents multiline JLabel

JMultilineLabel() - Constructor for class edu.iastate.metnet.dataManager.JMultilineLabel

JNDI_NAME - Static variable in interface edu.iastate.metnet.interfaces.MyFacadeHome

JNDI_NAME - Static variable in interface edu.iastate.metnet.interfaces.MyFacadeLocalHome

JNDI_NAME - Static variable in interface edu.iastate.metnet.interfaces.MyMetnetServiceHome

JNDI_NAME - Static variable in interface edu.iastate.metnet.interfaces.MyMetnetServiceLocalHome

JNDI_NAME - Static variable in interface edu.iastate.metnet.interfaces.MyPaperHome

join(MyTreeAlgorithm.TreeNode) - Method in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm

joining tree contour

join(List) - Method in class edu.iastate.metnet.hibernate.Abbreviationrules

join(Collection) - Static method in class edu.iastate.metnet.utils.Utils

turn the vector of object to comma separate string, notice only applying for integer, not string, otherwise the string should contain the double quota already.

join(Collection, String) - Static method in class edu.iastate.metnet.utils.Utils

turn the vector of object to comma separate string, notice only applying for integer, not string, otherwise the string should contain the double quota already.

joinCommonProperties(Blockunit) - Method in class edu.iastate.biocyc.dao.txt.AbstractBiocycElement

join common properties like synonyms, comments and references

joinConfidence(Blockunit) - Method in class edu.iastate.biocyc.dao.txt.AbstractBiocycElement

JOURNAL - Static variable in class edu.iastate.jtm.jmed.Limits

JOURNALS - Static variable in class edu.iastate.jtm.jmed.Entrez

jPanel1 - Variable in class edu.iastate.metnet.ui.AbbreviationRules

jPanel1 - Variable in class edu.iastate.metnet.ui.SearchDialog

jPanel1 - Variable in class edu.iastate.metnet.ui.SynonymCandidate

jPanel2 - Variable in class edu.iastate.metnet.ui.SearchDialog

jScrollPane1 - Variable in class edu.iastate.metnet.ui.AbbreviationRules