A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

L

LA - Static variable in class edu.iastate.jtm.jmed.Query.Field

label - Variable in class edu.iastate.metnet.dao.ZVertex

other label for the node

LabelledComponent - Class in edu.iastate.metnet.newgui

Places a right-aligned label next to a given JComponent.

LabelledComponent(String, JComponent, int) - Constructor for class edu.iastate.metnet.newgui.LabelledComponent

Constructs a LabelledComponent with the given parameters.

LabelledComponent(String, JComponent) - Constructor for class edu.iastate.metnet.newgui.LabelledComponent

Constructs a LabelledComponent with no forced label width.

LabelsButtonListener - Class in edu.iastate.metnet.birdseyeview

The LabelsButtonListener Class notifies the controller that the user would like to toggle the map labels.

LabelsButtonListener(BirdsEyeView) - Constructor for class edu.iastate.metnet.birdseyeview.LabelsButtonListener

Constructor.

LAST10YEAR - Static variable in class edu.iastate.jtm.jmed.Limits

LAST1MONTH - Static variable in class edu.iastate.jtm.jmed.Limits

LAST1WEEK - Static variable in class edu.iastate.jtm.jmed.Limits

LAST1YEAR - Static variable in class edu.iastate.jtm.jmed.Limits

LAST2MONTH - Static variable in class edu.iastate.jtm.jmed.Limits

LAST2WEEK - Static variable in class edu.iastate.jtm.jmed.Limits

LAST2YEAR - Static variable in class edu.iastate.jtm.jmed.Limits

LAST3MONTH - Static variable in class edu.iastate.jtm.jmed.Limits

LAST3WEEK - Static variable in class edu.iastate.jtm.jmed.Limits

LAST4WEEK - Static variable in class edu.iastate.jtm.jmed.Limits

LAST5YEAR - Static variable in class edu.iastate.jtm.jmed.Limits

LAST6MONTH - Static variable in class edu.iastate.jtm.jmed.Limits

last_x - Variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

last_x - Variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

last_y - Variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

last_y - Variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

lastModifiedDate - Variable in class edu.iastate.metnet.dao.PathwayObject

the last modified data of the pathway

lastPort - Variable in class edu.iastate.reload.ui.MyMarqueeHandler

last position of the edge

LaunchApplication(String) - Method in class edu.iastate.metnet.hivemindService.Launcher

LaunchApplicationListener - Class in edu.iastate.metnet.actions

LaunchApplicationListener(String) - Constructor for class edu.iastate.metnet.actions.LaunchApplicationListener

launchAtGeneSearch() - Method in class edu.iastate.metnet.metaomgraph.MetaOmTablePanel

Opens a browser to the AtGeneSearch results page for the selected rows.

Launcher - Class in edu.iastate.metnet.hivemindService

HiveMind service that launchs MetNet applications

Launcher() - Constructor for class edu.iastate.metnet.hivemindService.Launcher

LaunchMetNet - Class in edu.iastate.metnet.launch

Main class for MetNet, displaying the launcher window.

LaunchMetNet() - Constructor for class edu.iastate.metnet.launch.LaunchMetNet

launchTAIR() - Method in class edu.iastate.metnet.metaomgraph.MetaOmTablePanel

Opens a browser to the TAIR page for the selected rows.

layout(MyTreeAlgorithm.TreeNode) - Method in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm

layout a group of cell views which compose of a tree structure

layoutContainer(Container) - Method in class edu.iastate.metnet.birdseyeview.GenePanelLayout

layoutTrees(List) - Method in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm

layout the trees

lblLongTerm - Variable in class edu.iastate.metnet.ui.AbbreviationRules

lblName - Variable in class edu.iastate.metnet.ui.InteractionSelector

label of search string

lblShortTerm - Variable in class edu.iastate.metnet.ui.AbbreviationRules

lblStatus - Variable in class edu.iastate.metnet.ui.AbbreviationRules

LEFT - Static variable in class edu.iastate.jtm.util.NameCharType

LEFT - Static variable in class edu.iastate.jtm.util.ParenFinder

LEFT - Static variable in class edu.iastate.jtm.util.ParenParser

left(Element) - Method in class edu.iastate.jtm.util.ParenParser

LEFT - Static variable in class edu.iastate.jtm.util.SlidingWindow

LEFT_VERTICAL - Variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

LEFT_VERTICAL - Variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

leftContour - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm.TreeNode

leftEbidEidMap - Variable in class edu.iastate.metnet.dao.InteractionStructure

blockid of substrates

leftGraph - Variable in class edu.iastate.metnet.dao.PathwayAlignmentImpl

one pathway graph

leftId() - Method in class fcmodeler.pathbinder.FilterEntry

leftList - Variable in class edu.iastate.metnet.ui.AddInteractionForm

from part of the interaction

leftNode - Variable in class edu.iastate.metnet.dao.AbstractMultiPathwayElementNode

define the left element node

leftPart - Variable in class edu.iastate.metnet.aracyc.AracycInteraction

ENZYME (in enzrxns.dat)

leftPart - Variable in class edu.iastate.metnet.dao.MetnetInteraction

left part's blockid as Integer

leftUnit - Variable in class edu.iastate.metnet.model.AbstractMultiBlockunitDecorator

left entitywithlocation

LegendPanel - Class in edu.iastate.metnet.birdseyeview

LegendPanel(BirdsEyeView, Dimension) - Constructor for class edu.iastate.metnet.birdseyeview.LegendPanel

LegendPanel.spinnerListener - Class in edu.iastate.metnet.birdseyeview

LegendPanel.spinnerListener(int) - Constructor for class edu.iastate.metnet.birdseyeview.LegendPanel.spinnerListener

length() - Method in class edu.iastate.jtm.util.SlidingWindow

length() - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Get the length of the file.

length() - Method in class edu.iastate.metnet.soft.RandomAccessFile

Get the length of the file.

LETTER - Static variable in class edu.iastate.jtm.util.SlidingWindow

LetterDigitTrieNode - Class in edu.iastate.jtm.dic

A trie supporting letters (case insensitive) and digits.

LetterDigitTrieNode() - Constructor for class edu.iastate.jtm.dic.LetterDigitTrieNode

LetterTrieNode - Class in edu.iastate.jtm.dic

A trie supporting letters (upper and lower case).

LetterTrieNode() - Constructor for class edu.iastate.jtm.dic.LetterTrieNode

level(Element) - Method in class edu.iastate.jtm.util.ParenParser

levelDistance - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm

default level distance

levelheight - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm.TreeNode

LEXICAL_COMPARATOR - Static variable in class edu.iastate.metnet.metaomgraph.TableSorter

lightColor - Static variable in class edu.iastate.reload.skin.MetalUtilsX

The light color to draw the pattern.

lightColor - Static variable in class javax.swing.plaf.metal.MetalUtils

The light color to draw the pattern.

likeAbbreviation(CharSequence) - Method in class edu.iastate.jtm.AbbreviationChecker

Limits - Class in edu.iastate.jtm.jmed

Encapsulate PubMed interface's limits.

Limits() - Constructor for class edu.iastate.jtm.jmed.Limits

Limits(Limits) - Constructor for class edu.iastate.jtm.jmed.Limits

linearSearch(Object[], Object) - Static method in class edu.iastate.metnet.metaomgraph.utils.Utils

Searches a given array for a given value.

List - Class in edu.iastate.metnet.launch

List(String) - Constructor for class edu.iastate.metnet.launch.List

List() - Constructor for class edu.iastate.metnet.launch.List

LIST_CREATE_CAUSE - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmProject

LIST_DELETE_CAUSE - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmProject

LIST_FROM_FILTER_COMMAND - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmTablePanel

LIST_RENAME_CAUSE - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmProject

listenerList - Variable in class com.jgoodies.binding.extras.ListModelHolder

listModel - Variable in class edu.iastate.reload.ui.CommentEditForm

original table model

listModel - Variable in class edu.iastate.reload.ui.ReferenceEditForm

original reference table model

listModel - Variable in class edu.iastate.reload.ui.SynonymEditForm

original table model

ListModelHolder - Class in com.jgoodies.binding.extras

A ValueHolder implementation that holds instances of ListModel and that is a ListModel itself.

ListModelHolder(ListModel) - Constructor for class com.jgoodies.binding.extras.ListModelHolder

Constructs a ListModelHolder on the given ListModel.

ListNode - Class in edu.iastate.metnet.launch

ListNode(Object) - Constructor for class edu.iastate.metnet.launch.ListNode

ListNode(Object, ListNode) - Constructor for class edu.iastate.metnet.launch.ListNode

ListPanel - Class in edu.iastate.metnet.metaomgraph

ListPanel() - Constructor for class edu.iastate.metnet.metaomgraph.ListPanel

listPanel - Static variable in class edu.iastate.metnet.MetNetLAFTest

ListTable - Class in edu.iastate.metnet.metaomgraph

ListTable() - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTable(int, int) - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTable(Object[][], Object[]) - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTable(TableModel, TableColumnModel, ListSelectionModel) - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTable(TableModel, TableColumnModel) - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTable(TableModel) - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTable(Vector, Vector) - Constructor for class edu.iastate.metnet.metaomgraph.ListTable

ListTransferHandler - Class in edu.iastate.metnet.metaomgraph

ListTransferHandler.DraggableRows - Class in edu.iastate.metnet.metaomgraph

ListTransferHandler.DraggableRows(int[]) - Constructor for class edu.iastate.metnet.metaomgraph.ListTransferHandler.DraggableRows

ListTree - Class in edu.iastate.metnet.metaomgraph

ListTree() - Constructor for class edu.iastate.metnet.metaomgraph.ListTree

ListTree.DraggableNode - Class in edu.iastate.metnet.metaomgraph

ListTree.DraggableNode() - Constructor for class edu.iastate.metnet.metaomgraph.ListTree.DraggableNode

ListTree.DraggableNode(Object, boolean) - Constructor for class edu.iastate.metnet.metaomgraph.ListTree.DraggableNode

ListTree.DraggableNode(Object) - Constructor for class edu.iastate.metnet.metaomgraph.ListTree.DraggableNode

litRepSearch(String) - Method in class edu.iastate.metnet.hivemindService.Browser

links to Arabidosis publications search page.

liveEntity - Variable in class edu.iastate.metnet.dao.InputNode

data object

liveEntityListModel - Variable in class edu.iastate.metnet.ui.AmorphousQueryForm

entity data list model

LiveEntitySearchForm - Class in edu.iastate.reload.ui

LiveEntitySearchForm(Object) - Constructor for class edu.iastate.reload.ui.LiveEntitySearchForm

Creates new form LiveEntitySearchForm

LNG - Static variable in class edu.iastate.jtm.jmed.Limits

load() - Method in class edu.iastate.metnet.birdseyeview.LoadController

This method opens the load window.

LOAD_INFO_COMMAND - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmGraph

LOAD_SORT_ACTION_COMMAND - Static variable in class edu.iastate.metnet.metaomgraph.chart.CustomSortDialog

loadAllData() - Method in class edu.iastate.metnet.birdseyeview.LoadController

Added by Mohammed Alabsi - April 13th, 2006 Method loads all the data in file to experiment table.

LoadButtonListener - Class in edu.iastate.metnet.birdseyeview

The LoadButtonListener Class notifies the controller that the user would like to load new data.

LoadButtonListener(BirdsEyeView) - Constructor for class edu.iastate.metnet.birdseyeview.LoadButtonListener

Constructor.

LoadCancelButtonListener - Class in edu.iastate.metnet.birdseyeview

The LoadCancelButtonListener Class handles the action of the user pushing the Cancel button in the load window.

LoadCancelButtonListener(LoadController) - Constructor for class edu.iastate.metnet.birdseyeview.LoadCancelButtonListener

Constructor.

loadConfiguration() - Method in class edu.iastate.metnet.birdseyeview.AbstractView

loadConfiguration() - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method load the configuration and repaint

loadConfiguration() - Method in class edu.iastate.metnet.birdseyeview.cellview.CellView

load the configuration and repaint (non-Javadoc)

loadconfiguration() - Method in class edu.iastate.metnet.birdseyeview.goview.GoLevel

This method calls all the nodes at this level to display their children and the data when load configuration

loadConfiguration() - Method in class edu.iastate.metnet.birdseyeview.goview.GoView

loadConfiguration() - Method in class edu.iastate.metnet.birdseyeview.pathwayview.PathwayView

loadConfiguration() - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method calls the view panel and instructs it to repaint based on the new configuration.

loadConfiguration(String) - Method in class edu.iastate.metnet.birdseyeview.ViewPanel

This method calls all the views to repaint based on new configuration.

LoadController - Class in edu.iastate.metnet.birdseyeview

The LoadController Class handles the loading of the experimental data for Bird's Eye View.

LoadController(BirdsEyeView) - Constructor for class edu.iastate.metnet.birdseyeview.LoadController

Constructor.

loadData(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.AbstractView

This method resets the annotation data and instructs subclasses to reload the data.

loadData() - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method calls the load controller to load experimental data.

loadData(String, String) - Method in class edu.iastate.metnet.birdseyeview.LoadController

This method loads the data of the given type from the given file path.

loadData(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method calls the view panel and instructs it to load the new data.

loadData(HashSet) - Method in class edu.iastate.metnet.birdseyeview.TreePanel

loadData(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.ViewPanel

This method loads the given annotation data for all the views.

loadDictionary(File, boolean) - Method in class edu.iastate.jtm.PluralDetector

loadDictionary(URL, boolean) - Method in class edu.iastate.jtm.PluralDetector

Loader - Class in edu.iastate.metnet.birdseyeview

The Loader Class reads in a file and returns an array of elements of interest.

Loader() - Constructor for class edu.iastate.metnet.birdseyeview.Loader

loadExperiment(int) - Method in class edu.iastate.metnet.birdseyeview.LoadController

This method loads the variances for the given experiment.

loadExtendedInfo() - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

Prompts the user to select an XML file, then attempts to initialize the extended info tree from the chosen file.

loadExtendedInfo(File) - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

Initializes this project's extended info tree from the given source file.

loadExtendedInfo(InputStream) - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

Initializes this project's extended info tree from the given InputStream.

loadExtendedInfo(Element) - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

Initializes this project's extended info tree from the given JDOM Element.

LoadFileButtonListener - Class in edu.iastate.metnet.birdseyeview

The LoadFileButtonListener Class handles the file choosing when a user wants to load a data file.

LoadFileButtonListener(LoadController, String, LoadPanel) - Constructor for class edu.iastate.metnet.birdseyeview.LoadFileButtonListener

Constructor.

loadGlobalDictionary(File, boolean) - Method in class edu.iastate.jtm.EntityFinder

loadImportedData(String, ArrayList, ArrayList, ArrayList, Hashtable) - Method in class edu.iastate.metnet.birdseyeview.LoadController

Method added by Mohammed Alabsi - April 13th, 2006 Method load the data recieved from a MetNet application and loads it into BEV

loadJournalFilter(File) - Method in class fcmodeler.pathbinder.MedCrawler

loadKeywords(File) - Method in class edu.iastate.jtm.assistant.Highlighter

LoadOkButtonListener - Class in edu.iastate.metnet.birdseyeview

The LoadOkButtonListener Class handles the action of the user pushing the Ok button in the load window.

LoadOkButtonListener(LoadController) - Constructor for class edu.iastate.metnet.birdseyeview.LoadOkButtonListener

Constructor.

LoadPanel - Class in edu.iastate.metnet.birdseyeview

The LoadPanel Class is a JPanel that displays information about choosing a data file, as well as buttons, etc.

LoadPanel(LoadController, String) - Constructor for class edu.iastate.metnet.birdseyeview.LoadPanel

Constructor.

loadPathwayTree(HashSet) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method calls treepanel and load the pathway list

loadPeekDefinition(File) - Method in class edu.iastate.jtm.EntityFinder

loadPluralDictionary(File) - Method in class edu.iastate.jtm.EntityFinder

loadPluralDictionary(URL) - Method in class edu.iastate.jtm.EntityFinder

loadResource() - Method in class edu.iastate.metnet.utils.Utils

loadStoplist(File) - Method in class fcmodeler.pathbinder.DictionaryBuilder

loadTable(File, boolean) - Method in class fcmodeler.pathbinder.MetaCrawler

LoadWindow - Class in edu.iastate.metnet.birdseyeview

The LoadWindow Class displays the interface which enables the user to choose which data files to load and which experiment to use for the Bird's Eye View.

LoadWindow(LoadController) - Constructor for class edu.iastate.metnet.birdseyeview.LoadWindow

Constructor.

localDic - Variable in class edu.iastate.jtm.EntityFinder

localGraph - Variable in class edu.iastate.metnet.graphmodel.MultiPathwayModel

local copy of model of model

localPathwayMap - Variable in class edu.iastate.metnet.graphmodel.MultiPathwayModel

local copy of all pathway selection

location - Variable in class edu.iastate.metnet.dao.AbstractPathwayElementNode

the subcellular location

locationConfidence - Variable in class edu.iastate.metnet.model.EntityConfidenceObservable

LocationNode - Class in fcmodeler.pathbinder.gui

LocationNode(String, String) - Constructor for class fcmodeler.pathbinder.gui.LocationNode

LocationPanel - Class in fcmodeler.pathbinder.gui

LocationPanel(MySqlConnector) - Constructor for class fcmodeler.pathbinder.gui.LocationPanel

locSql - Static variable in class fcmodeler.pathbinder.FilterUpdater

LOCUS - Static variable in class edu.iastate.metnet.metaomgraph.utils.Utils

Locusid - Interface in edu.iastate.metnet.datamodel.attributes

Interface represents Locusid

LocusInformationForm - Class in edu.iastate.metnet.ui

a form to display locus information which will replace the old AtGene Search application

LocusInformationForm() - Constructor for class edu.iastate.metnet.ui.LocusInformationForm

LocusInformationTable - Class in edu.iastate.metnet.ui

change the tooltip style to reflect the object's information rather than the cell's infiormation

LocusInformationTable() - Constructor for class edu.iastate.metnet.ui.LocusInformationTable

LocusInformationTable(TableModel, TableColumnModel, ListSelectionModel) - Constructor for class edu.iastate.metnet.ui.LocusInformationTable

LocusInformationTableModel - Class in edu.iastate.metnet.model

Tablemodel for locus information form

LocusInformationTableModel(ListModel) - Constructor for class edu.iastate.metnet.model.LocusInformationTableModel

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycClass

log4j facility

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycCompound

log4j facility

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycEnzrxn

log4j facility

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycGene

log4j facility

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycPathway

log4j facility

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycProtein

log4j facility

logger - Static variable in class edu.iastate.biocyc.dao.txt.BiocycReaction

log4j facility

logger - Static variable in class edu.iastate.biocyc.io.AttributeFileReaderEx

log4j facility

logger - Static variable in class edu.iastate.biocyc.io.BiocycImporter

log4j facility

logger - Static variable in class edu.iastate.biocyc.test.ArabReaderTest

log4j facility

logger - Static variable in class edu.iastate.biocyc.test.BlockunitTest

log4j facility

logger - Static variable in class edu.iastate.biocyc.test.RiceReaderTest

log4j facility

logger - Static variable in class edu.iastate.biocyc.ui.AraCycForm

log4j facility

logger - Static variable in class edu.iastate.biocyc.ui.BiocycForm

log4j facility

logger - Static variable in class edu.iastate.biocyc.utils.BiocycUtils

log4j facility

logger - Static variable in class edu.iastate.jtm.jmed.EUtility

logger - Static variable in class edu.iastate.metnet.admin.DirectForm

log4j facility

logger - Static variable in class edu.iastate.metnet.analysis.DefaultExcelSheet

logger - Static variable in class edu.iastate.metnet.analysis.DefaultJExcelClient

logger - Static variable in class edu.iastate.metnet.analysis.MySolver

log4j faqcility

logger - Static variable in class edu.iastate.metnet.aracyc.AbstractAracycFileReader

log4j facility

logger - Static variable in class edu.iastate.metnet.aracyc.AracycInteraction

logger - Static variable in class edu.iastate.metnet.aracyc.AttributeFileReader

log4j facility

logger - Static variable in class edu.iastate.metnet.aracyc.AttributeFileReaderEx

log4j facility

logger - Static variable in class edu.iastate.metnet.aracyc.ChangeName

logger - Static variable in class edu.iastate.metnet.aracyc.ConsoleApplication

log4j facility

logger - Static variable in class edu.iastate.metnet.aracyc.GraphStatistics

logger - Static variable in class edu.iastate.metnet.aracyc.InteractionFix

logger - Static variable in class edu.iastate.metnet.aracyc.ScriptSink

logger - Static variable in class edu.iastate.metnet.aracyc.TabularFileReaderEx

log4j facility

logger - Static variable in class edu.iastate.metnet.controller.AddPathwayController

logger - Static variable in class edu.iastate.metnet.controller.NodeSelectionController

log4j facility

logger - Static variable in class edu.iastate.metnet.dao.MetnetBlockUnit

log4j facility

logger - Static variable in class edu.iastate.metnet.dao.MetnetLiveEntity

log4j facility

logger - Static variable in class edu.iastate.metnet.db.ResultSetAdapter

logger - Static variable in class edu.iastate.metnet.db.TableAbbreviationRules

logger - Static variable in class edu.iastate.metnet.db.TableBlockUnitConfidence

logger - Static variable in class edu.iastate.metnet.export.GraphExporterImpl

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.AbstractVersionGraphMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.AdjacencyGraphWalker

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.AlignmentMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.CategoryEncoder

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.CategoryLayoutAlgorithm

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.CategoryMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.ChemicalReactionMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.ComparativeMetaphor

log4j facility

logger - Variable in class edu.iastate.metnet.graphmodel.CompositionGraphModel

log4j facility

logger - Variable in class edu.iastate.metnet.graphmodel.CompositionRelationMetaphor

logger - Static variable in class edu.iastate.metnet.graphmodel.EditingLayoutAlgorithm

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.EditingMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.FCMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.GlobalGraphWalker

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.GraphValidity

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.GraphWalker

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.HierachyLayoutAlgorithm

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.InputEncoder

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.InputLayoutAlgorithm

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.IsomorphismMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.JCategoryGraph

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.JGraphEncoder

logger - Static variable in class edu.iastate.metnet.graphmodel.JInputGraph

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.JMetaphorGraph

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.MultiPathwayModel

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.NetworkEditHelper

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.NetworkEncoder

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.PathwayModel

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.RemoveBridgeNodes

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.SearchInteractionTypeMetaphor

logger - Static variable in class edu.iastate.metnet.graphmodel.SearchNameMetaphor

logger - Static variable in class edu.iastate.metnet.graphmodel.ValidityMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.VersionEncoder

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.VersionGraph

logger - Static variable in class edu.iastate.metnet.graphmodel.VersionGraphMetaphor

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.VersionGraphModel

log4j facility

logger - Static variable in class edu.iastate.metnet.graphmodel.VersionyLayoutAlgorithm

log4j facility

logger - Static variable in class edu.iastate.metnet.model.AbbreviationRulesModel

logger - Static variable in class edu.iastate.metnet.model.AbbreviationTableModel

logger - Static variable in class edu.iastate.metnet.model.AbstractMultiBlockunitDecorator

log4j facility

logger - Static variable in class edu.iastate.metnet.model.AddPathwayModel

logger - Static variable in class edu.iastate.metnet.model.CandidateModel

logger - Static variable in class edu.iastate.metnet.model.CategoryTreeModel

log4j facility

logger - Static variable in class edu.iastate.metnet.model.ChebiOntologyTableModel

logger - Static variable in class edu.iastate.metnet.model.CoderuleCellEditor

logger - Static variable in class edu.iastate.metnet.model.CoderuleCellRenderer

logger - Static variable in class edu.iastate.metnet.model.CommentTableModel

logger - Static variable in class edu.iastate.metnet.model.CompositionBlockunit

logger - Static variable in class edu.iastate.metnet.model.DisplayObject

logger - Static variable in class edu.iastate.metnet.model.DomainObjectListModel

log4j facility

logger - Static variable in class edu.iastate.metnet.model.EntityConfidenceObservable

logger - Static variable in class edu.iastate.metnet.model.EntityNameModel

logger - Static variable in class edu.iastate.metnet.model.EntityPart

logger - Static variable in class edu.iastate.metnet.model.GroupListTableModel

logger - Static variable in class edu.iastate.metnet.model.GroupShareTableModel

logger - Static variable in class edu.iastate.metnet.model.InteractionPartsModel

logger - Static variable in class edu.iastate.metnet.model.InteractionSelectorModel

logger - Static variable in class edu.iastate.metnet.model.LocusInformationTableModel

logger - Static variable in class edu.iastate.metnet.model.MultiEntityDecorator

log4j facility

logger - Static variable in class edu.iastate.metnet.model.MultiInteractionDecorator

log4j facility

logger - Static variable in class edu.iastate.metnet.model.ReferenceTableModel

logger - Static variable in class edu.iastate.metnet.model.SynonymTableModel

logger - Static variable in class edu.iastate.metnet.model.TableSorter

logger - Static variable in class edu.iastate.metnet.model.TrivialTableModel

log4j facility

logger - Static variable in class edu.iastate.metnet.model.UserListTableModel

logger - Static variable in class edu.iastate.metnet.test.HibernateTest

logger - Static variable in class edu.iastate.metnet.test.MyFacadeTest

log4j facility

logger - Static variable in class edu.iastate.metnet.test.MyPaperTest

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.AbbreviationRules

logger - Static variable in class edu.iastate.metnet.ui.AddEntityForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.AddInteractionForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.AddPathwayForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.AmorphousQueryForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.BlockunitFinder

logger - Static variable in class edu.iastate.metnet.ui.CategoryChooseForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.CategoryCreateForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.CategoryEditForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.CategoryRenameForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.ChangePassword

logger - Static variable in class edu.iastate.metnet.ui.ClassEditForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.CytoMetnet

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.EntitySelector

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.GroupManagerForm

logger - Static variable in class edu.iastate.metnet.ui.HistoryReportForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.InteractionSelector

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.LocusInformationForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.MainWindow2

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.MemberManagerForm

logger - Static variable in class edu.iastate.metnet.ui.MyJTableEx

logger - Static variable in class edu.iastate.metnet.ui.NameService

logger facility

logger - Static variable in class edu.iastate.metnet.ui.NodeSelectionForm

logger - Static variable in class edu.iastate.metnet.ui.PathwayEditor

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.PathwayHighlightForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.PathwaySelector2

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.PropertiesMetalTheme

logger - Static variable in class edu.iastate.metnet.ui.RefService

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.RegisterForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.RegisterForm2

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.SBMLExporter

logger - Static variable in class edu.iastate.metnet.ui.StructuralQueryForm

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.StructureQueryHelper

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.TrivialSelector

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.VersionEditor

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.VersionSaver

log4j facility

logger - Static variable in class edu.iastate.metnet.ui.WebDBService

log4j facility

logger - Static variable in class edu.iastate.metnet.utils.ContextFactory

logger - Variable in class edu.iastate.metnet.utils.DesEncrypter

logger - Static variable in class edu.iastate.metnet.utils.MyFacadeFactory

log4j facility

logger - Static variable in class edu.iastate.metnet.utils.MyMetnetServiceFactory

log4j facility

logger - Static variable in class edu.iastate.metnet.utils.MyPaperFactory

log4j facility

logger - Static variable in class edu.iastate.metnet.utils.MyXmlRpcClientFactory

log4j facility

logger - Static variable in class edu.iastate.metnet.utils.Utils

logger - Static variable in class edu.iastate.reload.ui.CommentEditForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.DBSearchForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.FirstForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.InteractionSearchForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.LiveEntitySearchForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.MyMarqueeHandler

log4j facility

logger - Static variable in class edu.iastate.reload.ui.NetworkEditForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.ReferenceEditForm

log4j facility

logger - Static variable in class edu.iastate.reload.ui.SynonymEditForm

log4j facility

LogonForm - Class in edu.iastate.metnet.ui

log on window, support guest account

LogonForm(Frame, boolean) - Constructor for class edu.iastate.metnet.ui.LogonForm

new window for log on.

longValue() - Method in class edu.iastate.metnet.metaomgraph.CorrelationValue

longValue() - Method in class edu.iastate.metnet.metaomgraph.SortableData

LOOSE_TYPE - Static variable in class edu.iastate.jtm.util.ParenParser

LOWER_HORIZONTAL - Variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

LOWER_HORIZONTAL - Variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

LOWERCASE - Static variable in class edu.iastate.jtm.util.NameCharType

LowerTrieNode - Class in edu.iastate.jtm.dic

Lower case letter TrieNode.

LowerTrieNode() - Constructor for class edu.iastate.jtm.dic.LowerTrieNode