A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

W

waitForMyTurn() - Method in class edu.iastate.jtm.jmed.PubMedTimer

Wait for enough interval between two PubMed queries.

WaitingDialog - Class in edu.iastate.metnet.ui

Waiting Dialog

WaitingDialog(Frame, boolean) - Constructor for class edu.iastate.metnet.ui.WaitingDialog

default constructor

WaitingDialog(Dialog, boolean) - Constructor for class edu.iastate.metnet.ui.WaitingDialog

default constructor

WALK_ADJCENT - Static variable in class edu.iastate.metnet.graphmodel.GraphWalker

walk adjacent interaction nodes in each pass

WALK_ALL - Static variable in class edu.iastate.metnet.graphmodel.GraphWalker

walk all the interaction nodes in each pass

walkType - Variable in class edu.iastate.metnet.graphmodel.GraphWalker

how to walk throgh the graph model

walkWindow(CharBuffer, boolean, boolean) - Method in class edu.iastate.jtm.util.SlidingWindow

warn(Integer, String) - Method in class edu.iastate.metnet.graphmodel.GraphValidity

add one warning

WARNING_ADJACENT_INTERACTION - Static variable in class edu.iastate.metnet.graphmodel.GraphValidity

adjacent interaction.

WARNING_DUPLICATE_INTERACTION - Static variable in class edu.iastate.metnet.graphmodel.GraphValidity

duplicate interaction warning message

WARNING_NOTHING - Static variable in class edu.iastate.metnet.graphmodel.GraphValidity

no warnings

WARNING_UNKNOWN_LOCATION - Static variable in class edu.iastate.metnet.graphmodel.GraphValidity

unknown location

WARNING_UNSUPPORTED_ORGANISM - Static variable in class edu.iastate.metnet.graphmodel.GraphValidity

unsupported species

wd - Static variable in class edu.iastate.metnet.ui.WaitingDialog

global instance of waiting dialog

WebDBService - Class in edu.iastate.metnet.ui

for Entity Only, link to other object in web database

WebDBService() - Constructor for class edu.iastate.metnet.ui.WebDBService

WHITESPACE - Static variable in class edu.iastate.jtm.util.NameCharType

width - Variable in class edu.iastate.metnet.dao.ZVertex

width

width - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm.TreeNode

width of this node? or this tree?

WIDTH_MAX - Static variable in class edu.iastate.jtm.gui.TableUtil

WIDTH_MIN - Static variable in class edu.iastate.jtm.gui.TableUtil

WIDTH_PREFER - Static variable in class edu.iastate.jtm.gui.TableUtil

willDeleted - Variable in class edu.iastate.metnet.model.SelectedBlockunit

true if after merge, the blockunit is permanantly removed from database.

windowClosed(WindowEvent) - Method in class edu.iastate.metnet.metaomgraph.SimpleModalMaker

windowClosing(WindowEvent) - Method in class edu.iastate.metnet.metaomgraph.SimpleModalMaker

windowList - Static variable in class edu.iastate.metnet.ui.MainWindow2

store the visited window history list

windowMenu - Variable in class edu.iastate.metnet.MetNetTitlePane

The JMenu inside the menuBar.

windowOpened(WindowEvent) - Method in class edu.iastate.metnet.metaomgraph.SimpleModalMaker

WITHOUT - Static variable in class edu.iastate.jtm.assistant.GoogleScholar

WordTrieNode - Class in edu.iastate.jtm.dic

WordTrieNode() - Constructor for class edu.iastate.jtm.dic.WordTrieNode

workbook - Variable in class edu.iastate.metnet.analysis.DefaultJExcelClient

WRITE - Static variable in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Write to the file.

write(int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Write a byte to the file.

write(byte[]) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes b.length bytes from the specified byte array starting at offset off to this file.

write(byte[], int, int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes len bytes from the specified byte array starting at offset off to this file.

WRITE - Static variable in class edu.iastate.metnet.soft.RandomAccessFile

Write to the file.

write(int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Write a byte to the file.

write(byte[]) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes b.length bytes from the specified byte array starting at offset off to this file.

write(byte[], int, int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes len bytes from the specified byte array starting at offset off to this file.

writeBoolean(boolean) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a boolean to the file as a 1-byte value.

writeBoolean(boolean) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a boolean to the file as a 1-byte value.

writeByte(int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a byte to the file as a 1-byte value.

writeByte(int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a byte to the file as a 1-byte value.

writeBytes(byte[], int, int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Write len bytes from an array to the file.

writeBytes(String) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes the string to the file as a sequence of bytes.

writeBytes(char[], int, int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes the character array to the file as a sequence of bytes.

writeBytes(byte[], int, int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Write len bytes from an array to the file.

writeBytes(String) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes the string to the file as a sequence of bytes.

writeBytes(char[], int, int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes the character array to the file as a sequence of bytes.

writeChar(int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a char to the file as a 2-byte value, high byte first.

writeChar(int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a char to the file as a 2-byte value, high byte first.

writeChars(String) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a string to the file as a sequence of characters.

writeChars(String) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a string to the file as a sequence of characters.

writeDouble(double) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Converts the double argument to a long using the doubleToLongBits method in class Double, and then writes that long value to the file as an 8-byte quantity, high byte first.

writeDouble(double) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Converts the double argument to a long using the doubleToLongBits method in class Double, and then writes that long value to the file as an 8-byte quantity, high byte first.

writeFloat(float) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Converts the float argument to an int using the floatToIntBits method in class Float, and then writes that int value to the file as a 4-byte quantity, high byte first.

writeFloat(float) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Converts the float argument to an int using the floatToIntBits method in class Float, and then writes that int value to the file as a 4-byte quantity, high byte first.

writeInt(int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes an int to the file as four bytes, high byte first.

writeInt(int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes an int to the file as four bytes, high byte first.

writeLong(long) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a long to the file as eight bytes, high byte first.

writeLong(long) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a long to the file as eight bytes, high byte first.

WriterOpener - Class in edu.iastate.jtm.util

WriterOpener() - Constructor for class edu.iastate.jtm.util.WriterOpener

writeSampleToFile(String) - Method in class edu.iastate.jtm.jmed.PubMedSampler

writeShort(int) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a short to the file as two bytes, high byte first.

writeShort(int) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a short to the file as two bytes, high byte first.

writeUTF(String) - Method in class edu.iastate.metnet.metaomgraph.RandomAccessFile

Writes a string to the file using UTF-8 encoding in a machine-independent manner.

writeUTF(String) - Method in class edu.iastate.metnet.soft.RandomAccessFile

Writes a string to the file using UTF-8 encoding in a machine-independent manner.