A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

D

darkColor - Static variable in class edu.iastate.reload.skin.MetalUtilsX

The dark color to draw to draw the pattern.

darkColor - Static variable in class javax.swing.plaf.metal.MetalUtils

The dark color to draw to draw the pattern.

DASH - Static variable in class edu.iastate.jtm.util.SlidingWindow

dash1 - Variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

dash1 - Variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

dashStroke - Variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

dashStroke - Variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

data - Variable in class edu.iastate.metnet.analysis.AbstractExcelSheet

data - Variable in class edu.iastate.metnet.aracyc.AbstractAracycEntity

data - Variable in class edu.iastate.metnet.aracyc.AracycClass

data - Variable in class edu.iastate.metnet.aracyc.AracycCompound

data - Variable in class edu.iastate.metnet.launch.ListNode

data - Variable in class edu.iastate.metnet.model.AbstractPlotData

data - Variable in class edu.iastate.metnet.newgui.NoneditableTableModel

data - Variable in class edu.iastate.metnet.NoneditableTableModel

The data for the table

data - Variable in class edu.iastate.metnet.threads.DataThread

database - Variable in class edu.iastate.jtm.jmed.EUtility

Database - Class in edu.iastate.metnet.birdseyeview.db

The Database Class encapsulates the functionality that interacts with the Metnet MySQL database.

Database() - Constructor for class edu.iastate.metnet.birdseyeview.db.Database

Constructor.

DATABASE_NODE - Variable in class edu.iastate.metnet.aracyc.ConsoleApplication

data node in the configure file

databases - Static variable in class edu.iastate.jtm.jmed.Entrez

dataEnd - Variable in class edu.iastate.metnet.metaomgraph.RandomAccessFile

The offset in bytes of the end of the data in the buffer, from the start of the file.

dataEnd - Variable in class edu.iastate.metnet.soft.RandomAccessFile

The offset in bytes of the end of the data in the buffer, from the start of the file.

dataFolder - Variable in class edu.iastate.biocyc.ui.BiocycForm

specify the data folder

DataManager - Class in edu.iastate.metnet.dataManager

Main class for DataManager

dataMap - Variable in class edu.iastate.biocyc.dao.txt.AbstractBiocycElement

the attribute value

dataObject - Variable in class edu.iastate.metnet.dao.MyVersionNode

untyped data object

DataOpener - Class in edu.iastate.metnet.newgui

DataOpener() - Constructor for class edu.iastate.metnet.newgui.DataOpener

dataPanel - Variable in class edu.iastate.metnet.dataManager.DataManager

dataSize - Variable in class edu.iastate.metnet.metaomgraph.RandomAccessFile

The size of the data stored in the buffer, in bytes.

dataSize - Variable in class edu.iastate.metnet.soft.RandomAccessFile

The size of the data stored in the buffer, in bytes.

DataSorter - Class in edu.iastate.metnet.metaomgraph.chart

Constructs sort-order arrays for MetaOmChartPanels.

DataSorter(MetaOmChartPanel) - Constructor for class edu.iastate.metnet.metaomgraph.chart.DataSorter

dataTable - Variable in class edu.iastate.metnet.dataManager.DataManager

dataThread - Static variable in class edu.iastate.metnet.launch.LaunchMetNet

DataThread - Class in edu.iastate.metnet.threads

DataThread() - Constructor for class edu.iastate.metnet.threads.DataThread

date - Variable in class edu.iastate.metnet.dao.InteractionInformation

submit date

db - Variable in class edu.iastate.jtm.DuplicationChecker

DBNAME_KEY - Variable in class edu.iastate.metnet.aracyc.ConsoleApplication

database name node in the configure file

DBSearchForm - Class in edu.iastate.reload.ui

DBSearchForm() - Constructor for class edu.iastate.reload.ui.DBSearchForm

Creates new form DBSearchForm

dcipher - Variable in class edu.iastate.metnet.utils.DesEncrypter

debugOn - Variable in class edu.iastate.jtm.util.JarResources

decap(String) - Static method in class edu.iastate.jtm.TokenAnalyzer

decomposePathway(DirectedGraph, Map, Collection) - Method in class edu.iastate.biocyc.io.BiocycImporter

get the graph model containing specified pathways

DECORATION_SIZE - Static variable in class edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder

DECORATION_SIZE - Static variable in class edu.iastate.reload.ui.OverviewPanel.PannerViewfinder

decrypt(String) - Method in class edu.iastate.metnet.utils.DesEncrypter

deepCopy(Object) - Static method in class edu.iastate.metnet.utils.Utils

Returns a copy of the object, or null if the object cannot be serialized.

DEF_MAXDATE - Static variable in class edu.iastate.jtm.jmed.Limits

DEF_MINDATE - Static variable in class edu.iastate.jtm.jmed.Limits

DEF_PAREN_TYPE - Static variable in class edu.iastate.jtm.util.ParenFinder

DEFAULT - Static variable in class edu.iastate.jtm.jmed.Limits

DEFAULT_BACKGROUND - Static variable in class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

default background color

DEFAULT_FOREGROUND - Static variable in class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

default foreground color

DEFAULT_LINE_WIDTH - Static variable in class edu.iastate.metnet.graphmodel.AbstractGraphMetaphor

default line width for recovery

defaultBufferSize - Static variable in class edu.iastate.metnet.metaomgraph.RandomAccessFile

The default buffer size, in bytes.

defaultBufferSize - Static variable in class edu.iastate.metnet.soft.RandomAccessFile

The default buffer size, in bytes.

DefaultExcelSheet - Class in edu.iastate.metnet.analysis

DefaultExcelSheet(Sheet) - Constructor for class edu.iastate.metnet.analysis.DefaultExcelSheet

DefaultGraphMetaphor - Class in edu.iastate.metnet.graphmodel

interface for graph metaphor, which describe the mapping of the presentation layer of the graph and the content of the pathways.

DefaultGraphMetaphor() - Constructor for class edu.iastate.metnet.graphmodel.DefaultGraphMetaphor

DefaultJExcelClient - Class in edu.iastate.metnet.analysis

DefaultJExcelClient() - Constructor for class edu.iastate.metnet.analysis.DefaultJExcelClient

DefaultJExcelClient(String) - Constructor for class edu.iastate.metnet.analysis.DefaultJExcelClient

DefaultMetalTheme - Class in javax.swing.plaf.metal

The default theme for the MetalLookAndFeel.

DefaultMetalTheme() - Constructor for class javax.swing.plaf.metal.DefaultMetalTheme

Creates a new instance of this theme.

DefaultMetalThemeX - Class in edu.iastate.reload.skin

The default theme for the MetalLookAndFeel.

DefaultMetalThemeX() - Constructor for class edu.iastate.reload.skin.DefaultMetalThemeX

Creates a new instance of this theme.

DefaultMonitorable - Class in edu.iastate.jtm.gui

DefaultMonitorable() - Constructor for class edu.iastate.jtm.gui.DefaultMonitorable

defaultOrder() - Method in class edu.iastate.metnet.metaomgraph.chart.DataSorter

Sorts the data as it appeared in the original data file.

DefaultPlotData - Class in edu.iastate.metnet.model

DefaultPlotData() - Constructor for class edu.iastate.metnet.model.DefaultPlotData

DefaultPlotData(DefaultExcelSheet) - Constructor for class edu.iastate.metnet.model.DefaultPlotData

defaultProcessor - Variable in class edu.iastate.jtm.jmed.EUtility

A processor that parses the response into a DOM document.

DefaultRClient - Class in edu.iastate.metnet.analysis

DefaultRClient() - Constructor for class edu.iastate.metnet.analysis.DefaultRClient

defaultTheme - Static variable in class edu.iastate.metnet.ui.MainWindow2

default look and feel theme

DefaultViewID - Static variable in class edu.iastate.metnet.birdseyeview.BirdsEyeView

defineVisualStyle(VisualStyle, VisualMappingManager, CalculatorCatalog) - Static method in class edu.iastate.metnet.launch.RunCytoscape

degree - Variable in class edu.iastate.metnet.dao.TrivialMetabolite

the degree of the entity

DEL - Static variable in class edu.iastate.jtm.util.TokenProcessor

DEL_LEFT - Static variable in class edu.iastate.jtm.util.TokenProcessor

DEL_RIGHT - Static variable in class edu.iastate.jtm.util.TokenProcessor

DELAY - Static variable in class edu.iastate.metnet.ui.Blip

Delay per frame, in milliseconds.

DelegatingTableModel - Class in com.jgoodies.binding.extras

This implementation of the TableModel interface delegates all requests to an underlying TableModel delegate.

DelegatingTableModel(ValueModel) - Constructor for class com.jgoodies.binding.extras.DelegatingTableModel

Constructs a TableAdaptor that holds the delegated TableModel in the given delegate channel.

DelegatingTableModel(TableModel) - Constructor for class com.jgoodies.binding.extras.DelegatingTableModel

Constructs a TableAdaptor on the given delegate TableModel.

DelegatingTableModel() - Constructor for class com.jgoodies.binding.extras.DelegatingTableModel

Constructs a TableAdaptor on a dummy TableModel.

delete(String, String) - Static method in class edu.iastate.metnet.db.TableAbbreviationRules

DELETE_INFO_COLUMN_CAUSE - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmProject

DELETE_LIST_COMMAND - Static variable in class edu.iastate.metnet.metaomgraph.MetaOmTablePanel

DELETE_SORT_ACTION_COMMAND - Static variable in class edu.iastate.metnet.metaomgraph.chart.CustomSortDialog

deleteAbbreviation(Integer, String) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete the abbreviation for the blockunit and potential entity, if the abbreviation exists in the entity's table, move the abbreviation to all other blockunit' synonym table

deleteAbbreviation(Integer, String) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete the abbreviation for the blockunit and potential entity, if the abbreviation exists in the entity's table, move the abbreviation to all other blockunit' synonym table

deleteAbbreviationRule(String, String) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete the abbreviation rule

deleteAbbreviationRule(String, String) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete the abbreviation rule

deleteBlockunit(Integer, String, int) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete a blockunit

deleteBlockunit(Integer, String, int) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete a blockunit

deleteCategory(Integer) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete one category from the database

deleteCategory(Integer) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete one category from the database

deleteColumn(int) - Method in class edu.iastate.metnet.NoneditableTableModel

deleteComment(Integer, CommentObject) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete the comment from the blockunit

deleteComment(Integer, CommentObject) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete the comment from the blockunit

deleteDuplicate(String) - Method in class fcmodeler.pathbinder.FilterUpdater

deleteFiles(ArrayList<String>) - Method in class edu.iastate.metnet.dataManager.DataManager

deleteGeneList(String) - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

Deletes a gene list from this project.

deleteInfoColumn(int) - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

deleteListItem - Variable in class edu.iastate.metnet.dataManager.DataManager

deletePathway() - Method in class edu.iastate.metnet.controller.AddPathwayController

deleteReference(Integer, ReferenceObject) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete the reference from the blockunit

deleteReference(Integer, ReferenceObject) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete the reference from the blockunit

deleteRow(int) - Method in class edu.iastate.metnet.NoneditableTableModel

deleteRows(int[]) - Method in class edu.iastate.metnet.NoneditableTableModel

deleteSelected() - Method in class edu.iastate.metnet.metaomgraph.ListTree

deleteSelectedList() - Method in class edu.iastate.metnet.metaomgraph.MetaOmTablePanel

deleteSynonym(Integer, String) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

delete the synonym for the blockunit and potential entity, if the synonym exists in the entity's table, move the synonym to all other blockunit'

deleteSynonym(Integer, String) - Method in interface edu.iastate.metnet.interfaces.MyPaper

delete the synonym for the blockunit and potential entity, if the synonym exists in the entity's table, move the synonym to all other blockunit'

deleteTerm(Query.Term) - Method in class edu.iastate.jtm.jmed.Query

delimiters - Static variable in interface edu.iastate.jtm.Stemmer

depth - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm.TreeNode

dequeue() - Method in class edu.iastate.metnet.launch.Queue

derivedNodeSet - Variable in class edu.iastate.metnet.graphmodel.FCMetaphor

derived system nodes also need to be highlighted

DESCEND - Static variable in class edu.iastate.jtm.gui.TableSorter

DESCENDING - Static variable in class edu.iastate.metnet.metaomgraph.TableSorter

descFile - Variable in class edu.iastate.metnet.dataManager.DataManager

descFont - Variable in class edu.iastate.metnet.dataManager.DataManager

descPanel - Variable in class edu.iastate.metnet.dataManager.DataManager

description - Variable in class edu.iastate.jtm.assistant.QueryBuilder.QueryTemplate

description - Variable in class edu.iastate.metnet.dao.HistoryInformation

additional information

description - Variable in class edu.iastate.metnet.dataManager.DataManager

description - Variable in class edu.iastate.metnet.hibernate.BackgroundTask

DescriptionFrame - Class in edu.iastate.metnet.dataManager

DescriptionFrame() - Constructor for class edu.iastate.metnet.dataManager.DescriptionFrame

DesEncrypter - Class in edu.iastate.metnet.utils

usage:

DesEncrypter(SecretKey) - Constructor for class edu.iastate.metnet.utils.DesEncrypter

Desert - Class in edu.iastate.metnet.ui

Desert() - Constructor for class edu.iastate.metnet.ui.Desert

desktopPanel - Static variable in class edu.iastate.metnet.MetNetLAFTest

DESTINATION_BROWSE_COMMAND - Static variable in class edu.iastate.metnet.soft.SOFTParserOptionPanel

detachPathway(Integer, Integer, String) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

detach the interaction from the pathway

detachPathway(Integer, Integer, String) - Method in interface edu.iastate.metnet.interfaces.MyPaper

detach the interaction from the pathway

detachPathwayFromClass(Integer, Collection) - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

detach the pathway from the class

detachPathwayFromClass(Integer, Collection) - Method in interface edu.iastate.metnet.interfaces.MyPaper

detach the pathway from the class

detachProcess() - Method in class edu.iastate.jtm.gui.StatusBar

Detach the monitored process.

detectAbnormalEntitywithcontext() - Method in interface edu.iastate.metnet.interfaces.MyFacade

detect abnormal record in the table entitywithcontext.

detectAbnormalEntitywithcontext() - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

detect abnormal record in the table entitywithcontext.

detectDuplicationInteractions() - Method in interface edu.iastate.metnet.interfaces.MyFacade

get the group of same structure interactions by encoding the structure and compute the digest

detectDuplicationInteractions() - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

get the group of same structure interactions by encoding the structure and compute the digest

detectOrphanInteraction() - Method in interface edu.iastate.metnet.interfaces.MyFacade

detect all orphan interaction in the database

detectOrphanInteraction() - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

detect all orphan interaction in the database

detectOrphanInteraction2() - Method in interface edu.iastate.metnet.interfaces.MyFacade

detect all orphan interaction in the database

detectOrphanInteraction2() - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

detect all orphan interaction in the database

detectWrongInteraction() - Method in class edu.iastate.metnet.aracyc.InteractionFix

detectWrongInteraction() - Method in interface edu.iastate.metnet.interfaces.MyFacade

detect the wrong interaction which contains entitywithcontext

detectWrongInteraction() - Method in interface edu.iastate.metnet.interfaces.MyFacadeLocal

detect the wrong interaction which contains entitywithcontext

determineColor(double) - Static method in class edu.iastate.metnet.birdseyeview.GeneColor

This method determines the color of a gene panel based on the given variance.

DF - Static variable in class edu.iastate.jtm.util.VocabularyCounter

df - Variable in class edu.iastate.jtm.util.VocabularyCounter.TfDf

dialog - Variable in class edu.iastate.metnet.hivemindService.ExportToBirdsEyeView

dialog - Variable in class edu.iastate.metnet.StripedTable.ColorEditor

dialogPanel - Static variable in class edu.iastate.metnet.MetNetLAFTest

DictionaryBuilder - Class in fcmodeler.pathbinder

Create dictionaries from the Entity and EntitySynonym tables.

DictionaryBuilder(MySqlConnector) - Constructor for class fcmodeler.pathbinder.DictionaryBuilder

DictionaryPanel - Class in fcmodeler.pathbinder.updater

DictionaryPanel(StatusBar, JFileChooser) - Constructor for class fcmodeler.pathbinder.updater.DictionaryPanel

difference(String) - Method in class edu.iastate.metnet.model.DisplayObject

determine if two display object are equal

DIGIT - Static variable in class edu.iastate.jtm.util.NameCharType

DIGIT - Static variable in class edu.iastate.jtm.util.SlidingWindow

DigitTrieNode - Class in edu.iastate.jtm.dic

A trie supporting digits.

DigitTrieNode() - Constructor for class edu.iastate.jtm.dic.DigitTrieNode

directdetermineColor(double) - Static method in class edu.iastate.metnet.birdseyeview.GeneColor

This method determines the color of a gene panel based on the given variance.

directedGraph - Variable in class edu.iastate.metnet.ui.CompileWorker

query graph

DirectForm - Class in edu.iastate.metnet.admin

DirectForm() - Constructor for class edu.iastate.metnet.admin.DirectForm

Creates new form DirectForm

disable(boolean) - Method in class edu.iastate.metnet.birdseyeview.LoadPanel

This method disable the flie choose button to switch between separates files style and integrated style

display() - Method in class edu.iastate.metnet.launch.MetNetAboutFrame

display - Variable in class edu.iastate.metnet.model.DisplayObject

displayaddAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method instructs the root panel to display the given annotation in addition to the annotations that are already being displayed.

displayaddAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method displays the new additional given annotation List in the text panel.

displayaddAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.TextPanel

This method displays

displayAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method instructs the root panel to display the given annotation in addition to the annotations that are already being displayed.

displayAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method displays the given annotation in the text panel.

displayAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method sets the annotations to be displayed in the text panel.

displayChildren(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.goview.GoNode

This method sets the panel to show the child panels.

displayChildren(GoNode, boolean) - Method in class edu.iastate.metnet.birdseyeview.goview.GoView

This method displays the child nodes for the given node.

displayGenes() - Method in class edu.iastate.metnet.birdseyeview.goview.GoLevel

This method calls all the nodes at this level to display their children.

displayGenes() - Method in class edu.iastate.metnet.birdseyeview.goview.GoNode

This method sets the panel to show the gene panels.

DisplayObject - Class in edu.iastate.metnet.model

store the pair of display string and value object in the combobox data model

DisplayObject(Object, Object) - Constructor for class edu.iastate.metnet.model.DisplayObject

DisplayObject() - Constructor for class edu.iastate.metnet.model.DisplayObject

displayOrHideAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method instructs the root panel to display or hide the given annotation based on the current status of the annotation.

displayOrHideAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method displays or hides the given annotation in the text panel based on the annotations current status.

displayOrHideAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.TextPanel

This method changes the display status of the given annotation.

displaySpePathGenes(String) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method lets program only show the genes belonging to special pathway

distance(double, double, double, double, double, double) - Method in class edu.iastate.metnet.analysis.AbstractExcelSheet

P0 is the point, and P1 and P2 specify the line segment

distance(int, double, double) - Method in class edu.iastate.metnet.analysis.AbstractExcelSheet

distance(double, double, double, double) - Method in class edu.iastate.metnet.analysis.AbstractExcelSheet

distance(MyTreeAlgorithm.PolyLine, MyTreeAlgorithm.PolyLine) - Method in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm

accumulate the delta x of both contour

distance(double, double, double, double, double, double) - Method in class edu.iastate.metnet.model.AbstractPlotData

distance(int, double, double) - Method in class edu.iastate.metnet.model.AbstractPlotData

distance(double, double, double, double) - Method in class edu.iastate.metnet.model.AbstractPlotData

DnDTree - Class in edu.iastate.jtm.gui

A simple easy-to-use Drag&Drop JTree with mouse-over and drop-under feedback.

DnDTree(DefaultTreeModel) - Constructor for class edu.iastate.jtm.gui.DnDTree

Returns a new instance of the DNDTree for the specified TreeModel.

DnDTree.DnDTreeCellRenderer - Class in edu.iastate.jtm.gui

DnDTree.DnDTreeCellRenderer() - Constructor for class edu.iastate.jtm.gui.DnDTree.DnDTreeCellRenderer

doAnalysis(MetaOmProject, String, int, String, int) - Static method in class edu.iastate.metnet.metaomgraph.MetaOmAnalyzer

Runs an analysis of the given row, in a given list, in a given project.

DOCSET - Static variable in class edu.iastate.jtm.jmed.Limits

doImport(MetaOmProject) - Static method in class edu.iastate.metnet.metaomgraph.ImportListDialog

Shows a modal import dialog, and returns the user-entered values that match row names in the active project.

doInBackground() - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView.Task

DomainObjectListModel - Class in edu.iastate.metnet.model

DomainObjectListModel() - Constructor for class edu.iastate.metnet.model.DomainObjectListModel

DOMAINS - Static variable in class edu.iastate.jtm.jmed.Entrez

done() - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView.Task

doneFlag - Static variable in class edu.iastate.metnet.threads.PathwayGeneThread

doOK() - Method in class edu.iastate.metnet.metaomgraph.NewProjectDialog

doQuery(String) - Static method in class edu.iastate.metnet.metaomgraph.AtGeneSearch

doSearch(TreeSearcher.Query) - Method in class edu.iastate.metnet.metaomgraph.TreeSearcher

Searches the tree specified by this TreeSearcher's constructor using the given query.

doSearch(TreeSearcher.Query[]) - Method in class edu.iastate.metnet.metaomgraph.TreeSearcher

Searches the tree specified by this TreeSearcher's constructor using the given queries.

doubleValue() - Method in class edu.iastate.metnet.metaomgraph.CorrelationValue

doubleValue() - Method in class edu.iastate.metnet.metaomgraph.SortableData

DP - Static variable in class edu.iastate.jtm.jmed.Query.Field

dragDropEnd(DragSourceDropEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragEnter(DropTargetDragEvent) - Method in class edu.iastate.metnet.metaomgraph.chart.OrderableTable

dragEnter(DropTargetDragEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragEnter(DragSourceDragEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragExit(DropTargetEvent) - Method in class edu.iastate.metnet.metaomgraph.chart.OrderableTable

dragExit(DropTargetEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragExit(DragSourceEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragGestureRecognized(DragGestureEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragOver(DropTargetDragEvent) - Method in class edu.iastate.metnet.metaomgraph.chart.OrderableTable

dragOver(DropTargetDragEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dragOver(DragSourceDragEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.FlippingSquaresThrobber

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.GlowyChipThrobber

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.ImageThrobber

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.MetaOmThrobber

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.PolygonThrobber

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.SpinningPolygonThrobber

drawThrobber(Graphics2D) - Method in class edu.iastate.metnet.metaomgraph.throbber.Throbber

drop(DropTargetDropEvent) - Method in class edu.iastate.metnet.metaomgraph.chart.OrderableTable

drop(DropTargetDropEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dropActionChanged(DropTargetDragEvent) - Method in class edu.iastate.metnet.metaomgraph.chart.OrderableTable

dropActionChanged(DropTargetDragEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dropActionChanged(DragSourceDragEvent) - Method in class edu.iastate.metnet.metaomgraph.ListTree

dscIcon - Variable in class edu.iastate.jtm.gui.SortableHeaderRenderer

DualListPanel - Class in edu.iastate.metnet.metaomgraph

A panel with two lists that allows you to move values between them.

DualListPanel(Object[]) - Constructor for class edu.iastate.metnet.metaomgraph.DualListPanel

Creates a dual-list panel with the given data in the inactive list, and a blank active list.

DualListPanel(Object[], Object[]) - Constructor for class edu.iastate.metnet.metaomgraph.DualListPanel

Creates a dual-list panel with the given data in the inactive and active lists.

DualTablePanel - Class in edu.iastate.metnet.metaomgraph

DualTablePanel(Object[][], String[]) - Constructor for class edu.iastate.metnet.metaomgraph.DualTablePanel

Creates a dual-list panel with the given data in the inactive list, and a blank active list.

DualTablePanel(Object[][], Object[][], String[]) - Constructor for class edu.iastate.metnet.metaomgraph.DualTablePanel

Creates a dual-list panel with the given data in the inactive and active lists.

dummyLabel(Container, int, int) - Method in class edu.iastate.metnet.utils.Utils

DummyPath - Class in edu.iastate.metnet.utils

DummyPath() - Constructor for class edu.iastate.metnet.utils.DummyPath

Creates a new instance of DummyPath

duplicatedName(Map) - Static method in class edu.iastate.biocyc.dao.txt.AbstractBiocycElement

collect duplicate common name.

DuplicationChecker - Class in edu.iastate.jtm

DuplicationChecker(MySqlConnector, String) - Constructor for class edu.iastate.jtm.DuplicationChecker

dx - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm.PolyLine

relative offset position