A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

H

handler - Variable in class fcmodeler.pathbinder.HintParse

hasActiveValues() - Method in class edu.iastate.metnet.metaomgraph.DualListPanel

hasActiveValues() - Method in class edu.iastate.metnet.metaomgraph.DualTablePanel

Determines if there are values in the active table.

hasAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.cellview.CellularLocation

hasBlockUnitConfidence(int) - Method in class edu.iastate.metnet.model.EntityConfidenceObservable

hasCheckedBoxes() - Method in class edu.iastate.metnet.mapbuilder.SelectPathwayPanel

hasCode(Integer) - Method in class edu.iastate.metnet.birdseyeview.cellview.CellularLocation

This method indicates if this location is represented by the given code.

hasData() - Method in class edu.iastate.metnet.NoneditableTableModel

hasDuplicate() - Static method in class edu.iastate.metnet.db.ReturnCode

hasExtendedInfo() - Method in class edu.iastate.metnet.mapbuilder.NodeInfo

Checks if there is any extended information for this node.

hasFlottingPort() - Method in class edu.iastate.reload.ui.MyMarqueeHandler

By default there aren't any floatting port.

hasGoBioProcess(Integer) - Method in class edu.iastate.metnet.birdseyeview.Annotation

This method indicates whether or not this gene product participates in the GO Biological Process with the given ID.

hasGoFunction(Integer) - Method in class edu.iastate.metnet.birdseyeview.Annotation

This method indicates whether or not this gene product has the GO molecular function with the given ID.

hash - Static variable in class edu.iastate.metnet.graphmodel.CategoryEncoder

unique identifier for every graph element

hash - Static variable in class edu.iastate.metnet.graphmodel.InputEncoder

unique identifier for every graph element

hash - Static variable in class edu.iastate.metnet.graphmodel.JGraphEncoder

hash - Static variable in class edu.iastate.metnet.graphmodel.NetworkEncoder

store the graph cell order

hash - Static variable in class edu.iastate.metnet.graphmodel.VersionEncoder

hashCode() - Method in class edu.iastate.jtm.jmed.MedCitation

hashCode() - Method in class edu.iastate.metnet.dao.InteractionStructure

hashCode() - Method in class edu.iastate.metnet.export.AtGeneSearchObjectImpl

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractAbbreviationrules

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBlockunit

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBlockunitabbreviation

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBlockunitcomment

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBlockunitconfidence

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBlockunitref

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBlockunitsynonym

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendaactivatingcompound

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendacofactor

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendainhibitor

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendametalion

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendaproduct

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendarecommendname

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendaref

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendasubstrate

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractBrendasynonyms

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiChemicalData

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiComments

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiCompounds

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiDatabaseAccession

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiNames

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiOntology

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiReference

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiRelation

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractChebiVertices

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractClassName

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodeconfidence

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodedatasource

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodeentitytype

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodeinteractiontype

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodelocation

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodeorganism

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCodereferencetype

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractCoderule

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntity

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntityabbreviation

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntitycomment

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntityOntology

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntityPubchem

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntityPubchemName

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntityref

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntitysynonym

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractEntitywithcontext

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractExternaldb

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractGroupList

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractGroupMember

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractGroupShare

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractGtairProperty

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractHistoryFlatInteraction

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractHistoryFlatLiveEntity

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractHistoryFlatPathway

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractInteraction

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractInteractionparts

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractInteractionproperties

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractPathwayparts

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairAffy25kArrayElements

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairAffy8kArrayElements

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairAfgcArrayElements

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairAgiToUniprot

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairAracycDump

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairAthGoGoslim

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairSequencedGenes

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractTairTargetpAnalysis

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.AbstractUser

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BlockunitcommentKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BlockunitrefKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BlockunitsynonymKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendaactivatingcompoundKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendacofactorKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendainhibitorKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendametalionKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendaproductKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendasubstrateKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.BrendasynonymsKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.EntityabbreviationKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.EntitycommentKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.EntityrefKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.EntitysynonymKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.EntitywithcontextKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.ExternaldbKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.GroupMemberKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.GroupShareKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.InteractionpartsKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class edu.iastate.metnet.hibernate.PathwaypartsKey

Implementation of the hashCode method conforming to the Bloch pattern with the exception of array properties (these are very unlikely primary key types).

hashCode() - Method in class fcmodeler.pathbinder.Entity

hashCode() - Method in class fcmodeler.pathbinder.FilterEntry

HashDictionary - Class in edu.iastate.jtm.dic

A dictionary backed with a hashtable.

HashDictionary() - Constructor for class edu.iastate.jtm.dic.HashDictionary

Creates a new instance of HashDictionary

HashDictionary(boolean) - Constructor for class edu.iastate.jtm.dic.HashDictionary

HashDictionary(SlidingWindow, boolean, boolean, boolean) - Constructor for class edu.iastate.jtm.dic.HashDictionary

hashSet(Map, Object, Object) - Static method in class edu.iastate.metnet.utils.Utils

hasLastCorrelation() - Method in class edu.iastate.metnet.metaomgraph.MetaOmProject

hasMethod(Object, String) - Static method in class edu.iastate.metnet.utils.Utils

detect if the method exists or not

hasMorePmids() - Method in class edu.iastate.jtm.jmed.ESearch

hasMorePmids() - Method in class edu.iastate.jtm.jmed.PubMedQuerier

hasMoreText() - Method in interface edu.iastate.jtm.gui.Highlightable

hasMoreText() - Method in class edu.iastate.jtm.gui.HighlightableTextPane

hasName(String) - Method in class edu.iastate.metnet.birdseyeview.cellview.CellularLocation

This method indicates if this location is represented by the given name.

hasRequiredAttributes() - Method in class edu.iastate.metnet.soft.Entity

hasTableData() - Method in class edu.iastate.metnet.soft.Entity

height - Variable in class edu.iastate.metnet.dao.ZVertex

height

height - Variable in class edu.iastate.metnet.graphmodel.MyTreeAlgorithm.TreeNode

height of this node or this tree?

HelpButton - Class in edu.iastate.metnet.mapbuilder

Simple JButton that, when pressed, displays a MapbuilderHelpFrame.

HelpButton(String, int, int) - Constructor for class edu.iastate.metnet.mapbuilder.HelpButton

Simple JButton that, when pressed, displays a MapbuilderHelpFrame.

HelpButtonAction - Class in edu.iastate.metnet.actions

HelpButtonAction(String) - Constructor for class edu.iastate.metnet.actions.HelpButtonAction

HelpResource - Class in edu.iastate.reload.ui

store the help resource in this class

HelpResource() - Constructor for class edu.iastate.reload.ui.HelpResource

HelpWindow - Class in edu.iastate.metnet.ui

show the help information of the program

HelpWindow() - Constructor for class edu.iastate.metnet.ui.HelpWindow

Creates new form HelpWindow

helpWindow - Static variable in class edu.iastate.metnet.ui.MainWindow2

help information window instance

HelpWindow.HelpPage - Class in edu.iastate.metnet.ui

the main page for listing the help document

HelpWindow.HelpPage(String, String) - Constructor for class edu.iastate.metnet.ui.HelpWindow.HelpPage

hexToBuffer(String) - Static method in class edu.iastate.metnet.utils.HexUtil

Returns a byte array built from the byte values represented by the input hexadecimal string.

hexToString(String) - Static method in class edu.iastate.metnet.utils.HexUtil

Returns a string built from the byte values represented by the input hexadecimal string.

HexUtil - Class in edu.iastate.metnet.utils

Copyright c2001-2004 Trygve Isaacson.

HexUtil() - Constructor for class edu.iastate.metnet.utils.HexUtil

HibernateTest - Class in edu.iastate.metnet.test

HibernateTest() - Constructor for class edu.iastate.metnet.test.HibernateTest

HiddenLink - Class in fcmodeler.pathbinder

HiddenLink(MySqlConnector, PathBinder) - Constructor for class fcmodeler.pathbinder.HiddenLink

HiddenLink.Link - Class in fcmodeler.pathbinder

HiddenLink.Link(String, int) - Constructor for class fcmodeler.pathbinder.HiddenLink.Link

HiddenLinkFrame - Class in fcmodeler.pathbinder.gui

HiddenLinkFrame(HiddenLink, Entity[], Entity[]) - Constructor for class fcmodeler.pathbinder.gui.HiddenLinkFrame

hideAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method instructs the root panel to no longer display the given annotation.

hideAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method removes the given annotation from the text panel.

hideColumn(int) - Method in class edu.iastate.metnet.metaomgraph.DualTablePanel

Hides the specified column from view.

HierachyLayoutAlgorithm - Class in edu.iastate.metnet.graphmodel

hierachical layout.

HierachyLayoutAlgorithm() - Constructor for class edu.iastate.metnet.graphmodel.HierachyLayoutAlgorithm

highlight(Highlightable) - Method in class edu.iastate.jtm.assistant.Highlighter

highlight(Highlighter) - Method in interface edu.iastate.jtm.gui.Highlightable

highlight(Highlighter) - Method in class edu.iastate.jtm.gui.HighlightableTextPane

Highlight - Static variable in class edu.iastate.metnet.birdseyeview.TextPanel

Highlightable - Interface in edu.iastate.jtm.gui

HighlightableTextPane - Class in edu.iastate.jtm.gui

HighlightableTextPane() - Constructor for class edu.iastate.jtm.gui.HighlightableTextPane

highlightAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method highlights the given annoation.

highlightAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method highlights the given annoation.

highlightAnnotation(Annotation) - Method in class edu.iastate.metnet.birdseyeview.TextPanel

This method changes the background color of the given annotation in the list.

highlightAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.BirdsEyeView

This method highlights the given annoation.

highlightAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.RootPanel

This method highlights the given annoation.

highlightAnnotations(ArrayList) - Method in class edu.iastate.metnet.birdseyeview.TextPanel

This method changes the background color of the given annotation in the list.

highlightCitation(boolean) - Method in class edu.iastate.jtm.assistant.CitationPanel

highlighter - Static variable in class edu.iastate.jtm.assistant.Controller

Highlighter - Class in edu.iastate.jtm.assistant

Highlighter(File) - Constructor for class edu.iastate.jtm.assistant.Highlighter

Highlighter(URL) - Constructor for class edu.iastate.jtm.assistant.Highlighter

highlightPathway(Collection) - Method in class edu.iastate.metnet.ui.PathwayEditor

highlight the selected pathway

HintParse - Class in fcmodeler.pathbinder

HintParse() - Constructor for class fcmodeler.pathbinder.HintParse

HistoryBlockunit - Interface in edu.iastate.metnet.dao

get the version information

HistoryBlockunitImpl - Class in edu.iastate.metnet.dao

an implementationo of the historyblockunit for version check

HistoryBlockunitImpl() - Constructor for class edu.iastate.metnet.dao.HistoryBlockunitImpl

HistoryFlatInteraction - Class in edu.iastate.metnet.hibernate

hibernate class

HistoryFlatInteraction() - Constructor for class edu.iastate.metnet.hibernate.HistoryFlatInteraction

default constructor

HistoryFlatInteraction(Integer) - Constructor for class edu.iastate.metnet.hibernate.HistoryFlatInteraction

default constructor

HistoryFlatLiveEntity - Class in edu.iastate.metnet.hibernate

hibernate class

HistoryFlatLiveEntity() - Constructor for class edu.iastate.metnet.hibernate.HistoryFlatLiveEntity

default constructor

HistoryFlatLiveEntity(Integer) - Constructor for class edu.iastate.metnet.hibernate.HistoryFlatLiveEntity

default constructor

HistoryFlatPathway - Class in edu.iastate.metnet.hibernate

hibernate class

HistoryFlatPathway() - Constructor for class edu.iastate.metnet.hibernate.HistoryFlatPathway

default constructor

HistoryFlatPathway(Integer) - Constructor for class edu.iastate.metnet.hibernate.HistoryFlatPathway

default constructor

HistoryInformation - Class in edu.iastate.metnet.dao

contain the history information, such as the blockid, recordid for undelete, name if deleted and other information for display

HistoryInformation() - Constructor for class edu.iastate.metnet.dao.HistoryInformation

default constructor

historyListModel - Variable in class edu.iastate.metnet.ui.HistoryReportForm

history data list model

HistoryReportForm - Class in edu.iastate.metnet.ui

report the change history

HistoryReportForm() - Constructor for class edu.iastate.metnet.ui.HistoryReportForm

Creates new form HistoryReportForm

HistoryTableModel - Class in edu.iastate.metnet.model

HistoryTableModel(ListModel) - Constructor for class edu.iastate.metnet.model.HistoryTableModel

historyUsed() - Method in class edu.iastate.jtm.jmed.Limits

hits - Variable in class edu.iastate.jtm.EntityFinder

HOMOLOGENE - Static variable in class edu.iastate.jtm.jmed.Entrez

HORIZONTAL - Static variable in class edu.iastate.metnet.metaomgraph.chart.RangeMarker

HSVtoRGB(double, double, double) - Static method in class edu.iastate.metnet.birdseyeview.GeneColor

This method determines the RGB values of the given color in HSV values.

HTML - Static variable in class edu.iastate.jtm.jmed.Limits

HyperLinkCellRenderer - Class in edu.iastate.jtm.gui

HyperLinkCellRenderer(String) - Constructor for class edu.iastate.jtm.gui.HyperLinkCellRenderer

HyperlinkLabel - Class in edu.iastate.jtm.gui

HyperlinkLabel(String) - Constructor for class edu.iastate.jtm.gui.HyperlinkLabel

HyperlinkLabel(String, String) - Constructor for class edu.iastate.jtm.gui.HyperlinkLabel

HyperlinkLabel(String, URL) - Constructor for class edu.iastate.jtm.gui.HyperlinkLabel

HyperlinkLabel(String, String, URL) - Constructor for class edu.iastate.jtm.gui.HyperlinkLabel

hyperlinkUpdate(HyperlinkEvent) - Method in class edu.iastate.metnet.metaomgraph.MetaOmHelpListener

hyperlinkUpdate(HyperlinkEvent) - Method in class edu.iastate.metnet.metaomgraph.MetaOmTips