Hierarchy For All Packages

Package Hierarchies:

com.jgoodies.binding.extras, edu.iastate.biocyc.dao.rdb, edu.iastate.biocyc.dao.txt, edu.iastate.biocyc.io, edu.iastate.biocyc.test, edu.iastate.biocyc.ui, edu.iastate.biocyc.utils, edu.iastate.jtm, edu.iastate.jtm.assistant, edu.iastate.jtm.dic, edu.iastate.jtm.gui, edu.iastate.jtm.jmed, edu.iastate.jtm.util, edu.iastate.metnet, edu.iastate.metnet.actions, edu.iastate.metnet.admin, edu.iastate.metnet.analysis, edu.iastate.metnet.aracyc, edu.iastate.metnet.birdseyeview, edu.iastate.metnet.birdseyeview.cellview, edu.iastate.metnet.birdseyeview.db, edu.iastate.metnet.birdseyeview.goview, edu.iastate.metnet.birdseyeview.pathwayview, edu.iastate.metnet.controller, edu.iastate.metnet.dao, edu.iastate.metnet.dataManager, edu.iastate.metnet.datamodel, edu.iastate.metnet.datamodel.attributes, edu.iastate.metnet.datamodel.db, edu.iastate.metnet.db, edu.iastate.metnet.event, edu.iastate.metnet.export, edu.iastate.metnet.graphmodel, edu.iastate.metnet.hibernate, edu.iastate.metnet.hiveface, edu.iastate.metnet.hivemindService, edu.iastate.metnet.hivetest, edu.iastate.metnet.interfaces, edu.iastate.metnet.launch, edu.iastate.metnet.mapbuilder, edu.iastate.metnet.metaomgraph, edu.iastate.metnet.metaomgraph.chart, edu.iastate.metnet.metaomgraph.test, edu.iastate.metnet.metaomgraph.throbber, edu.iastate.metnet.metaomgraph.utils, edu.iastate.metnet.model, edu.iastate.metnet.newgui, edu.iastate.metnet.soft, edu.iastate.metnet.test, edu.iastate.metnet.threads, edu.iastate.metnet.ui, edu.iastate.metnet.utils, edu.iastate.reload.model, edu.iastate.reload.skin, edu.iastate.reload.ui, fcmodeler, fcmodeler.pathbinder, fcmodeler.pathbinder.gui, fcmodeler.pathbinder.updater, javax.swing.plaf.metal

Class Hierarchy

• java.lang.Object
  • edu.iastate.jtm.AbbreviationChecker
  • edu.iastate.metnet.dao.AbbreviationObject (implements java.io.Serializable)
  • edu.iastate.metnet.ui.AbbreviationRules_btnClose_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.AbbreviationRules_btnDelete_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.AbbreviationRules_btnGenerate_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.AbbreviationRules_btnInsert_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.AbbreviationRules_btnModify_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.AbbreviationRules_btnSortLongTerm_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.AbbreviationRules_btnSortShortTerm_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.hibernate.AbstractAbbreviationrules (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Abbreviationrules (implements java.lang.Comparable<T>, java.io.Serializable)
  • edu.iastate.metnet.aracyc.AbstractAracycEntity (implements edu.iastate.metnet.aracyc.IAracycEntity)
    • edu.iastate.metnet.aracyc.AracycCompound
  • edu.iastate.metnet.aracyc.AbstractAracycEntityWithLocation (implements edu.iastate.metnet.aracyc.IAracycEntityWithLocation)
  • edu.iastate.metnet.aracyc.AbstractAracycFileReader (implements edu.iastate.metnet.aracyc.IAracycFileReader)
    • edu.iastate.metnet.aracyc.AttributeFileReader
      • edu.iastate.metnet.aracyc.ClassesDatReader
      • edu.iastate.metnet.aracyc.CompoundsDatReader
    • edu.iastate.metnet.aracyc.AttributeFileReaderEx
    • edu.iastate.metnet.aracyc.TabularFileReader
    • edu.iastate.metnet.aracyc.TabularFileReaderEx
  • edu.iastate.biocyc.dao.txt.AbstractBiocycElement (implements edu.iastate.biocyc.dao.txt.BiocycElement)
    • edu.iastate.biocyc.dao.txt.BiocycClass
    • edu.iastate.biocyc.dao.txt.BiocycCompound
    • edu.iastate.biocyc.dao.txt.BiocycEnzrxn
    • edu.iastate.biocyc.dao.txt.BiocycGene
    • edu.iastate.biocyc.dao.txt.BiocycPathway
    • edu.iastate.biocyc.dao.txt.BiocycProtein
    • edu.iastate.biocyc.dao.txt.BiocycReaction
  • edu.iastate.metnet.hibernate.AbstractBlockunit (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Blockunit (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBlockunitabbreviation (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Blockunitabbreviation (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBlockunitcomment (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Blockunitcomment (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBlockunitconfidence (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Blockunitconfidence (implements java.io.Serializable)
  • edu.iastate.metnet.model.AbstractBlockunitDecorator
    • edu.iastate.metnet.model.EntitywithcontextDecorator
    • edu.iastate.metnet.model.InteractionDecorator
    • edu.iastate.metnet.model.PathwayDecorator
  • edu.iastate.metnet.hibernate.AbstractBlockunitref (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Blockunitref (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBlockunitsynonym (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Blockunitsynonym (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendaactivatingcompound (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendaactivatingcompound (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendacofactor (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendacofactor (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendainhibitor (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendainhibitor (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendametalion (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendametalion (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendaproduct (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendaproduct (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendarecommendname (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendarecommendname (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendaref (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendaref (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendasubstrate (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendasubstrate (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractBrendasynonyms (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Brendasynonyms (implements java.io.Serializable)
  • javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
    • javax.swing.DefaultCellEditor (implements javax.swing.table.TableCellEditor, javax.swing.tree.TreeCellEditor)
      • edu.iastate.metnet.model.CoderuleCellEditor
    • edu.iastate.metnet.StripedTable.ColorEditor (implements java.awt.event.ActionListener, javax.swing.table.TableCellEditor)
  • org.jgraph.graph.AbstractCellView (implements org.jgraph.graph.CellView, java.io.Serializable)
    • org.jgraph.graph.VertexView
      • edu.iastate.metnet.graphmodel.MultiVertexView
  • edu.iastate.metnet.hibernate.AbstractChebiChemicalData (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiChemicalData (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiComments (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiComments (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiCompounds (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiCompounds (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiDatabaseAccession (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiDatabaseAccession (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiNames (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiNames (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiOntology (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiOntology (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiReference (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiReference (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiRelation (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiRelation (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractChebiVertices (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ChebiVertices (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractClassName (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.ClassName (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCodeconfidence (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codeconfidence (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCodedatasource (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codedatasource (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCodeentitytype (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codeentitytype (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCodeinteractiontype (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codeinteractiontype (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCodelocation (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codelocation (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCodeorganism (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codeorganism (implements java.io.Serializable)
  • edu.iastate.metnet.model.AbstractCodePresentation (implements edu.iastate.metnet.model.ICodePresentation)
    • edu.iastate.metnet.model.CodeRulePresentation
  • edu.iastate.metnet.hibernate.AbstractCodereferencetype (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Codereferencetype (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractCoderule (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Coderule (implements java.io.Serializable)
  • org.jfree.data.AbstractDataset (implements java.lang.Cloneable, org.jfree.data.Dataset, java.io.ObjectInputValidation, java.io.Serializable)
    • edu.iastate.metnet.analysis.AbstractExcelSheet (implements edu.iastate.metnet.analysis.IExcelSheet)
      • edu.iastate.metnet.analysis.DefaultExcelSheet (implements org.jfree.data.TableXYDataset, org.jfree.data.XisSymbolic)
    • edu.iastate.metnet.model.AbstractPlotData (implements edu.iastate.metnet.model.IPlotData, org.jfree.data.XisSymbolic, org.jfree.data.XYDataset)
      • edu.iastate.metnet.model.DefaultPlotData
      • edu.iastate.metnet.model.FolderChange
  • edu.iastate.jtm.dic.AbstractDictionary
    • edu.iastate.jtm.dic.HashDictionary
    • edu.iastate.jtm.dic.TrieDictionary
  • edu.iastate.metnet.hibernate.AbstractEntity (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Entity (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntityabbreviation (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Entityabbreviation (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntitycomment (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Entitycomment (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntityOntology (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.EntityOntology (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntityPubchem (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.EntityPubchem (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntityPubchemName (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.EntityPubchemName (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntityref (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Entityref (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntitysynonym (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Entitysynonym (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractEntitywithcontext (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Entitywithcontext (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractExternaldb (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Externaldb (implements java.io.Serializable)
  • org._3pq.jgrapht.graph.AbstractGraph (implements org._3pq.jgrapht.Graph)
    • org._3pq.jgrapht.graph.AbstractBaseGraph (implements java.lang.Cloneable, org._3pq.jgrapht.Graph, java.io.Serializable)
      • org._3pq.jgrapht.graph.DefaultDirectedGraph (implements org._3pq.jgrapht.DirectedGraph)
        • edu.iastate.metnet.aracyc.GenericTree
          • edu.iastate.metnet.aracyc.ClassTree
    • org._3pq.jgrapht.graph.GraphDelegator (implements org._3pq.jgrapht.Graph, java.io.Serializable)
      • org._3pq.jgrapht.graph.DefaultListenableGraph (implements java.lang.Cloneable, org._3pq.jgrapht.ListenableGraph)
        • org._3pq.jgrapht.graph.ListenableDirectedGraph (implements org._3pq.jgrapht.DirectedGraph)
          • edu.iastate.metnet.graphmodel.CompositionGraphModel
          • edu.iastate.metnet.graphmodel.MultiPathwayModel
          • edu.iastate.metnet.graphmodel.PathwayModel
          • edu.iastate.metnet.graphmodel.VersionGraphModel
  • edu.iastate.metnet.graphmodel.AbstractGraphMetaphor (implements edu.iastate.metnet.graphmodel.IGraphMetaphor)
    • edu.iastate.metnet.graphmodel.AbstractVersionGraphMetaphor
      • edu.iastate.metnet.graphmodel.VersionGraphMetaphor
    • edu.iastate.metnet.graphmodel.AlignmentMetaphor
    • edu.iastate.metnet.graphmodel.CategoryMetaphor
    • edu.iastate.metnet.graphmodel.ChemicalReactionMetaphor
    • edu.iastate.metnet.graphmodel.ComparativeMetaphor
    • edu.iastate.metnet.graphmodel.CompositionRelationMetaphor
    • edu.iastate.metnet.graphmodel.DefaultGraphMetaphor
    • edu.iastate.metnet.graphmodel.EditingMetaphor
    • edu.iastate.metnet.graphmodel.FCMetaphor
    • edu.iastate.metnet.graphmodel.IsomorphismMetaphor
    • edu.iastate.metnet.graphmodel.PathwayElementMetaphor
    • edu.iastate.metnet.graphmodel.SearchInteractionTypeMetaphor
    • edu.iastate.metnet.graphmodel.SearchNameMetaphor
    • edu.iastate.metnet.graphmodel.ValidityMetaphor
  • edu.iastate.metnet.graphmodel.AbstractGraphProcessor (implements edu.iastate.metnet.graphmodel.IGraphProcessor)
    • edu.iastate.metnet.graphmodel.GraphWalker
      • edu.iastate.metnet.graphmodel.AdjacencyGraphWalker
      • edu.iastate.metnet.graphmodel.GlobalGraphWalker
    • edu.iastate.metnet.graphmodel.RemoveBridgeNodes
    • edu.iastate.metnet.graphmodel.RemoveCompositionNodes
    • edu.iastate.metnet.graphmodel.RemoveSelectedNodes
  • edu.iastate.metnet.hibernate.AbstractGroupList (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.GroupList (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractGroupMember (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.GroupMember (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractGroupShare (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.GroupShare (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractGtairProperty (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.GtairProperty (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractHistoryFlatInteraction (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.HistoryFlatInteraction (implements edu.iastate.metnet.dao.HistoryBlockunit, java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractHistoryFlatLiveEntity (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.HistoryFlatLiveEntity (implements edu.iastate.metnet.dao.HistoryBlockunit, java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractHistoryFlatPathway (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.HistoryFlatPathway (implements edu.iastate.metnet.dao.HistoryBlockunit, java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractInteraction (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Interaction (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractInteractionparts (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Interactionparts (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractInteractionproperties (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Interactionproperties (implements java.io.Serializable)
  • edu.iastate.metnet.analysis.AbstractJExcelClient (implements edu.iastate.metnet.analysis.IExcelClient)
    • edu.iastate.metnet.analysis.DefaultJExcelClient
  • javax.swing.AbstractListModel (implements javax.swing.ListModel, java.io.Serializable)
    • javax.swing.DefaultComboBoxModel (implements javax.swing.MutableComboBoxModel, java.io.Serializable)
      • edu.iastate.metnet.model.ConfidenceModel
    • edu.iastate.metnet.model.JDBCComboModel (implements javax.swing.ComboBoxModel)
  • edu.iastate.metnet.db.AbstractMetNetTable (implements edu.iastate.metnet.db.IMetNETTable)
    • edu.iastate.metnet.db.TableAbbreviationRules
    • edu.iastate.metnet.db.TableBlockUnitConfidence
    • edu.iastate.metnet.db.TableClassRelation
    • edu.iastate.metnet.db.TableCodeClass
    • edu.iastate.metnet.db.TableCodeConfidence
  • edu.iastate.metnet.model.AbstractMultiBlockunitDecorator
    • edu.iastate.metnet.model.MultiEntityDecorator
    • edu.iastate.metnet.model.MultiInteractionDecorator
  • edu.iastate.metnet.dao.AbstractMultiPathwayElementNode (implements edu.iastate.metnet.dao.MultiPathwayElementNode, java.io.Serializable)
    • edu.iastate.metnet.dao.MultiEntityNode
    • edu.iastate.metnet.dao.MultiInteractionNode
  • edu.iastate.metnet.dao.AbstractPathwayElementNode (implements edu.iastate.metnet.dao.PathwayElementNode, java.io.Serializable)
    • edu.iastate.metnet.dao.EntityNode
    • edu.iastate.metnet.dao.InteractionNode
  • edu.iastate.metnet.hibernate.AbstractPathwayparts (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.Pathwayparts (implements java.io.Serializable)
  • edu.iastate.metnet.analysis.AbstractRClient (implements edu.iastate.metnet.analysis.IRClient)
    • edu.iastate.metnet.analysis.DefaultRClient
    • edu.iastate.metnet.analysis.MyRClient
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • edu.iastate.metnet.model.AbbreviationRulesModel
    • edu.iastate.metnet.model.CandidateModel
    • edu.iastate.jtm.assistant.CitationPool (implements edu.iastate.jtm.gui.Markable, edu.iastate.jtm.gui.Monitorable, edu.iastate.jtm.util.Queue)
    • com.jgoodies.binding.extras.DelegatingTableModel
    • edu.iastate.metnet.metaomgraph.FilterableTableModel
    • edu.iastate.metnet.NoneditableTableModel
    • edu.iastate.metnet.newgui.NoneditableTableModel
    • com.jgoodies.binding.adapter.TableAdapter
      • edu.iastate.metnet.model.AbbreviationTableModel
      • edu.iastate.biocyc.ui.AraCycPathwayModel
      • edu.iastate.metnet.model.ChebiOntologyTableModel
      • edu.iastate.metnet.model.CommentTableModel
      • edu.iastate.reload.model.CommentTableModel
      • edu.iastate.metnet.model.CompositionSelectionModel
      • edu.iastate.metnet.model.EntityDBModel
      • edu.iastate.metnet.model.EntityListModel
      • edu.iastate.metnet.model.EntityNameModel
      • edu.iastate.reload.model.EntityObjectTableModel
      • edu.iastate.reload.model.EntitySearchTableModel
      • edu.iastate.metnet.model.GroupListTableModel
      • edu.iastate.metnet.model.GroupShareTableModel
      • edu.iastate.metnet.model.HistoryTableModel
      • edu.iastate.reload.model.InteractionObjectTableModel
      • edu.iastate.metnet.model.InteractionPartsModel
      • edu.iastate.reload.model.InteractionSearchTableModel
      • edu.iastate.metnet.model.InteractionSelectorModel
      • edu.iastate.metnet.model.LocusInformationTableModel
      • edu.iastate.metnet.model.MultiSelectionModel
      • edu.iastate.biocyc.ui.PathwayChoiceModel
      • edu.iastate.metnet.ui.PathwayChoiceTableModel
      • edu.iastate.reload.model.PathwayObjectTableModel
      • edu.iastate.metnet.model.PathwayTableModel
      • edu.iastate.metnet.model.ReferenceTableModel
      • edu.iastate.reload.model.ReferenceTableModel
      • edu.iastate.metnet.model.SpeciesTableModel
      • edu.iastate.metnet.model.SynonymTableModel
      • edu.iastate.reload.model.SynonymTableModel
      • edu.iastate.metnet.model.TrivialTableModel
      • edu.iastate.metnet.model.UserListTableModel
    • edu.iastate.metnet.dataManager.TableDataModel
    • edu.iastate.jtm.gui.TableMap (implements javax.swing.event.TableModelListener)
      • edu.iastate.jtm.gui.TableSorter
    • edu.iastate.metnet.model.TableMap (implements javax.swing.event.TableModelListener)
      • edu.iastate.metnet.model.TableSorter
    • edu.iastate.metnet.metaomgraph.TableSorter
  • edu.iastate.metnet.hibernate.AbstractTairAffy25kArrayElements (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairAffy25kArrayElements (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairAffy8kArrayElements (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairAffy8kArrayElements (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairAfgcArrayElements (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairAfgcArrayElements (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairAgiToUniprot (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairAgiToUniprot (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairAracycDump (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairAracycDump (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairAthGoGoslim (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairAthGoGoslim (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairSequencedGenes (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairSequencedGenes (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.AbstractTairTargetpAnalysis (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.TairTargetpAnalysis (implements java.io.Serializable)
  • edu.iastate.jtm.dic.AbstractTrieNode (implements edu.iastate.jtm.dic.TrieNode)
    • edu.iastate.jtm.dic.AsciiTrieNode
    • edu.iastate.jtm.dic.DigitTrieNode
    • edu.iastate.jtm.dic.FuzzyTrieNode
    • edu.iastate.jtm.dic.LetterDigitTrieNode
    • edu.iastate.jtm.dic.LetterTrieNode
    • edu.iastate.jtm.dic.LowerTrieNode
    • edu.iastate.jtm.dic.WordTrieNode
  • edu.iastate.metnet.hibernate.AbstractUser (implements java.io.Serializable)
    • edu.iastate.metnet.hibernate.User (implements java.io.Serializable)
  • edu.iastate.metnet.birdseyeview.AbstractView
    • edu.iastate.metnet.birdseyeview.cellview.CellView
    • edu.iastate.metnet.birdseyeview.goview.GoView
      • edu.iastate.metnet.birdseyeview.goview.GoBioProcessView
      • edu.iastate.metnet.birdseyeview.goview.GoFunctionView
    • edu.iastate.metnet.birdseyeview.pathwayview.PathwayView
  • edu.iastate.metnet.birdseyeview.ActionListComboBoxListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.controller.AddPathwayController
  • edu.iastate.metnet.model.AddPathwayModel
  • edu.iastate.metnet.dao.AlignmentObject (implements java.io.Serializable)
  • edu.iastate.metnet.metaomgraph.AnimatedSwingWorker
  • edu.iastate.metnet.birdseyeview.Annotation (implements java.lang.Comparable<T>)
  • edu.iastate.metnet.hivemindService.AnnotationService
  • edu.iastate.metnet.aracyc.AracycClass
  • edu.iastate.metnet.aracyc.AracycEntity
  • edu.iastate.metnet.aracyc.AracycImporter
  • edu.iastate.metnet.aracyc.AracycInteraction
  • junit.framework.Assert
    • junit.framework.TestCase (implements junit.framework.Test)
      • edu.iastate.biocyc.test.ArabReaderTest
      • edu.iastate.metnet.test.BlockunitFinderTest
      • edu.iastate.biocyc.test.BlockunitTest
      • edu.iastate.metnet.hivetest.GraphExporterTest
      • edu.iastate.metnet.test.MD5DigestTest
      • edu.iastate.metnet.test.MyFacadeTest
      • edu.iastate.metnet.test.MyPaperTest
      • edu.iastate.metnet.test.MySolverTest
      • edu.iastate.biocyc.test.RiceReaderTest
      • edu.iastate.metnet.test.UtilsTest
  • edu.iastate.metnet.metaomgraph.AtGeneSearch
  • edu.iastate.metnet.dao.AtGeneSearchLocusObject (implements java.io.Serializable)
  • edu.iastate.metnet.export.AtGeneSearchObjectImpl (implements edu.iastate.metnet.hiveface.AtGeneSearchObject, java.io.Serializable)
  • edu.iastate.metnet.soft.Attribute
  • edu.iastate.biocyc.io.AttributeFileReaderEx
  • edu.iastate.metnet.hibernate.BackgroundTask (implements java.io.Serializable)
  • edu.iastate.metnet.hivemindService.BareBonesBrowserLaunch
  • org.jgraph.graph.BasicMarqueeHandler
    • edu.iastate.reload.ui.MyMarqueeHandler
  • edu.iastate.metnet.dao.BidiMultiHashMap (implements java.io.Serializable)
  • edu.iastate.biocyc.io.BiocycImporter
  • edu.iastate.biocyc.utils.BiocycUtils
  • edu.iastate.metnet.birdseyeview.BirdsEyeView (implements java.beans.PropertyChangeListener)
  • edu.iastate.biocyc.dao.rdb.BlockunitChoice (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BlockunitcommentKey (implements java.io.Serializable)
  • edu.iastate.metnet.ui.BlockunitFinder
  • edu.iastate.metnet.export.BlockunitObjectImpl (implements edu.iastate.metnet.hiveface.BlockunitObject, java.io.Serializable)
  • edu.iastate.metnet.hibernate.BlockunitrefKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BlockunitSynonymCandidate (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BlockunitsynonymKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendaactivatingcompoundKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendacofactorKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendainhibitorKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendametalionKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendaproductKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendasubstrateKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.BrendasynonymsKey (implements java.io.Serializable)
  • edu.iastate.metnet.hivemindService.Browser
  • edu.iastate.metnet.dao.Candidate (implements java.io.Serializable)
  • edu.iastate.metnet.graphmodel.CategoryEncoder
  • edu.iastate.metnet.dao.CategoryNode (implements java.io.Serializable)
  • edu.iastate.metnet.birdseyeview.cellview.CellularLocation
  • edu.iastate.metnet.birdseyeview.cellview.CentricComparator (implements java.util.Comparator<T>)
  • edu.iastate.metnet.aracyc.ChangeName
  • edu.iastate.metnet.metaomgraph.chart.ChartAnnotator (implements org.jfree.chart.ChartMouseListener, org.jfree.chart.event.ChartProgressListener)
  • edu.iastate.jtm.util.CharType
    • edu.iastate.jtm.util.NameCharType
  • edu.iastate.metnet.aracyc.ChebiImporter
  • edu.iastate.metnet.aracyc.ChebiNameConverter
  • edu.iastate.metnet.dao.ChebiObject (implements java.io.Serializable)
  • edu.iastate.metnet.dao.ChebiOntologyName (implements java.io.Serializable)
  • edu.iastate.metnet.dataManager.CheckBoxHandler (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.metaomgraph.CheckBoxHandler (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.birdseyeview.CheckBoxHandler (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.model.CheckCandidate
  • edu.iastate.biocyc.dao.rdb.ClassName (implements java.io.Serializable)
  • edu.iastate.metnet.model.ColumnEditorModel
  • edu.iastate.metnet.dao.CommentObject (implements java.io.Serializable)
  • edu.iastate.metnet.hivemindService.CompareInPathBinder
  • edu.iastate.metnet.birdseyeview.pathwayview.Compartment
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • edu.iastate.metnet.ColorChooseButton
            • edu.iastate.metnet.mapbuilder.HelpButton
            • edu.iastate.metnet.metaomgraph.MenuButton (implements java.awt.event.KeyListener, java.awt.event.MouseListener)
        • edu.iastate.metnet.ui.Blip (implements java.awt.event.ActionListener)
        • javax.swing.JComboBox (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
          • edu.iastate.metnet.model.CoderuleCellRenderer (implements javax.swing.table.TableCellRenderer)
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • edu.iastate.jtm.assistant.Exporter
        • org.jgraph.JGraph (implements javax.accessibility.Accessible, javax.swing.Scrollable, java.io.Serializable)
          • edu.iastate.metnet.graphmodel.JCategoryGraph
          • edu.iastate.metnet.graphmodel.JInputGraph
          • edu.iastate.metnet.graphmodel.JMetaphorGraph
          • edu.iastate.metnet.graphmodel.VersionGraph
        • javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
          • edu.iastate.metnet.metaomgraph.AboutFrame
          • edu.iastate.metnet.metaomgraph.chart.ChartDataExporter (implements java.awt.event.ActionListener)
          • edu.iastate.metnet.metaomgraph.CreateListFrame (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener)
          • edu.iastate.metnet.metaomgraph.chart.MetaOmChartPanel.MetaOmFrame
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer, java.io.Serializable)
            • fcmodeler.pathbinder.gui.TipRenderer
          • javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
            • edu.iastate.metnet.dataManager.ColoredTableCellRenderer
            • edu.iastate.metnet.metaomgraph.chart.CustomSortDialog.ColumnValueRenderer
            • edu.iastate.jtm.gui.HyperLinkCellRenderer
            • edu.iastate.jtm.gui.MarkableHeaderRenderer (implements edu.iastate.jtm.gui.MarkListener)
            • edu.iastate.jtm.gui.RowHeaderRenderer (implements javax.swing.ListCellRenderer)
            • edu.iastate.jtm.gui.SortableHeaderRenderer
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • edu.iastate.jtm.gui.DnDTree.DnDTreeCellRenderer
              • edu.iastate.jtm.assistant.QueryTreeCellRenderer
              • edu.iastate.jtm.assistant.QueryTreeCellRenderer2
          • edu.iastate.jtm.gui.ExpandableLabel
          • edu.iastate.jtm.gui.HyperlinkLabel
          • edu.iastate.metnet.StripedTable.ColorRenderer (implements javax.swing.table.TableCellRenderer)
          • edu.iastate.metnet.metaomgraph.throbber.Throbber (implements java.awt.event.ActionListener)
            • edu.iastate.metnet.metaomgraph.throbber.FlippingSquaresThrobber
            • edu.iastate.metnet.metaomgraph.throbber.GlowyChipThrobber
            • edu.iastate.metnet.metaomgraph.throbber.ImageThrobber
            • edu.iastate.metnet.metaomgraph.throbber.MetaOmThrobber
            • edu.iastate.metnet.metaomgraph.throbber.PolygonThrobber
            • edu.iastate.metnet.metaomgraph.throbber.SpinningPolygonThrobber
          • org.jgraph.graph.VertexRenderer (implements org.jgraph.graph.CellViewRenderer, java.io.Serializable)
            • edu.iastate.metnet.graphmodel.MultiVertexView.MultiVertexRenderer
        • edu.iastate.metnet.dataManager.JMultilineLabel
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • edu.iastate.metnet.ui.AbbreviationRules
          • edu.iastate.metnet.ui.AbstractMetnetWindow (implements edu.iastate.metnet.ui.IMetnetWindow)
            • edu.iastate.metnet.ui.AddInteractionForm (implements java.awt.event.ContainerListener, java.awt.event.KeyListener, edu.iastate.metnet.graphmodel.VersionListener)
            • edu.iastate.metnet.ui.AddPathwayForm (implements java.awt.event.ContainerListener, java.awt.event.KeyListener, edu.iastate.metnet.graphmodel.VersionListener)
            • edu.iastate.metnet.ui.PathwayEditor
          • edu.iastate.metnet.ui.AddEntityForm (implements java.awt.event.ContainerListener, java.awt.event.KeyListener, java.util.Observer, edu.iastate.metnet.graphmodel.VersionListener)
          • edu.iastate.metnet.metaomgraph.test.AffyChipAnimationPanel (implements java.awt.event.ActionListener)
          • edu.iastate.metnet.birdseyeview.AnnotationRenderer (implements javax.swing.ListCellRenderer)
          • edu.iastate.jtm.assistant.BiblioPanel (implements edu.iastate.jtm.assistant.CitationListener)
          • edu.iastate.metnet.birdseyeview.ButtonPanel
          • edu.iastate.jtm.assistant.CitationPanel (implements edu.iastate.jtm.assistant.CitationListener)
          • edu.iastate.metnet.metaomgraph.test.ColorBrickPanel (implements java.awt.event.MouseListener)
          • edu.iastate.metnet.birdseyeview.ColorPanel
          • edu.iastate.jtm.assistant.CompositeTermPanel (implements edu.iastate.jtm.assistant.QueryListener)
          • fcmodeler.pathbinder.updater.DictionaryPanel
          • edu.iastate.metnet.metaomgraph.DualListPanel (implements java.awt.event.ActionListener)
          • edu.iastate.metnet.metaomgraph.DualTablePanel (implements java.awt.event.ActionListener)
          • fcmodeler.pathbinder.gui.EntityPanel (implements java.awt.event.ComponentListener)
          • edu.iastate.metnet.birdseyeview.ExperimentChooserPanel
          • edu.iastate.metnet.metaomgraph.ExtendedInfoTreePanel
          • edu.iastate.jtm.gui.FileBar
          • fcmodeler.pathbinder.updater.FilterPanel
          • edu.iastate.metnet.birdseyeview.cellview.GenePanel
          • edu.iastate.metnet.birdseyeview.GenePanel
          • edu.iastate.metnet.ui.HelpWindow
          • edu.iastate.metnet.birdseyeview.ImagePanel
          • fcmodeler.pathbinder.updater.InteractionUpdatePanel
          • edu.iastate.metnet.newgui.LabelledComponent
          • edu.iastate.metnet.birdseyeview.LegendPanel
          • edu.iastate.metnet.metaomgraph.ListPanel (implements java.awt.event.ActionListener)
          • edu.iastate.metnet.birdseyeview.LoadPanel
          • fcmodeler.pathbinder.gui.LocationPanel
          • edu.iastate.metnet.mapbuilder.MapBuilderPanel
          • fcmodeler.pathbinder.updater.MedCrawlerPanel
          • fcmodeler.pathbinder.updater.MedLeasePanel
          • edu.iastate.metnet.metaomgraph.chart.MetaOmChartPanel (implements java.awt.event.ActionListener, org.jfree.chart.event.ChartChangeListener, org.jfree.chart.ChartMouseListener)
          • edu.iastate.metnet.metaomgraph.MetaOmTablePanel (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener)
          • edu.iastate.metnet.newgui.MetNetHelpBar
          • edu.iastate.metnet.newgui.MetNetStatusbar
          • edu.iastate.metnet.ui.NameService
          • edu.iastate.metnet.newgui.oldWizardPanel
          • edu.iastate.reload.ui.OverviewPanel (implements java.awt.event.ComponentListener, org.jgraph.event.GraphLayoutCacheListener, org.jgraph.event.GraphModelListener, java.beans.PropertyChangeListener)
          • edu.iastate.metnet.ui.OverviewPanel (implements java.awt.event.ComponentListener, org.jgraph.event.GraphLayoutCacheListener, org.jgraph.event.GraphModelListener, java.beans.PropertyChangeListener)
          • edu.iastate.jtm.assistant.PmidTablePanel
          • edu.iastate.metnet.metaomgraph.chart.PointInfoPanel
          • edu.iastate.metnet.metaomgraph.PolygonPanel
          • edu.iastate.metnet.metaomgraph.ProjectPropertiesPanel
          • edu.iastate.metnet.ui.PropertyTable
          • edu.iastate.jtm.assistant.QueryPanel (implements edu.iastate.jtm.assistant.QueryConsumer)
          • edu.iastate.metnet.ui.RefService
          • edu.iastate.metnet.birdseyeview.RootPanel
          • edu.iastate.metnet.metaomgraph.ScrollingTexturePanel
          • fcmodeler.pathbinder.gui.SearchPanel
          • edu.iastate.metnet.mapbuilder.SelectPathwayPanel
          • edu.iastate.metnet.metaomgraph.SimpleChipAnimationPanel
          • edu.iastate.jtm.assistant.SimpleTermPanel (implements edu.iastate.jtm.assistant.QueryListener)
          • edu.iastate.metnet.soft.SOFTParserOptionPanel (implements java.awt.event.ActionListener, javax.swing.ListCellRenderer, javax.swing.event.ListSelectionListener)
          • edu.iastate.metnet.ui.Splash
          • edu.iastate.jtm.gui.StatusBar (implements java.awt.event.ActionListener)
          • edu.iastate.metnet.ui.SynonymCandidate
          • edu.iastate.metnet.birdseyeview.TreePanel (implements javax.swing.event.TreeSelectionListener)
          • edu.iastate.metnet.metaomgraph.chart.TreeSearchQueryConstructionPanel (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
          • edu.iastate.metnet.mapbuilder.TrivialNodePanel
          • fcmodeler.pathbinder.gui.VerbPanel
          • edu.iastate.metnet.birdseyeview.ViewPanel
          • edu.iastate.metnet.ui.WebDBService
        • javax.swing.JScrollBar (implements javax.accessibility.Accessible, java.awt.Adjustable)
          • edu.iastate.metnet.metaomgraph.chart.ChartScrollBar (implements java.awt.event.AdjustmentListener, org.jfree.chart.event.ChartChangeListener, java.awt.event.MouseWheelListener)
        • javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
          • edu.iastate.metnet.birdseyeview.AnnotationTextPanel
          • edu.iastate.metnet.birdseyeview.TextPanel
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • fcmodeler.pathbinder.gui.TaxonomyPanel (implements java.awt.event.ActionListener, java.awt.event.ComponentListener)
        • javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
          • edu.iastate.metnet.ui.MyPanel
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • edu.iastate.metnet.metaomgraph.ListTable
          • edu.iastate.metnet.ui.MyJTableEx
            • edu.iastate.metnet.ui.LocusInformationTable
          • edu.iastate.jtm.gui.RowHeaderTable
          • edu.iastate.metnet.StripedTable
            • edu.iastate.metnet.metaomgraph.chart.OrderableTable (implements java.awt.dnd.DropTargetListener)
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JEditorPane
            • javax.swing.JTextPane
              • edu.iastate.jtm.gui.HighlightableTextPane (implements edu.iastate.jtm.gui.Highlightable)
              • fcmodeler.pathbinder.gui.SentencePane
          • javax.swing.JTextArea
            • edu.iastate.metnet.birdseyeview.TextArea
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • edu.iastate.metnet.metaomgraph.chart.ChartToolBar (implements java.awt.event.ActionListener)
          • edu.iastate.metnet.newgui.MetNetToolbar
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • edu.iastate.jtm.gui.DnDTree
          • edu.iastate.metnet.metaomgraph.ListTree (implements java.awt.dnd.Autoscroll, java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.dnd.DropTargetListener)
        • edu.iastate.metnet.MetNetTitlePane
        • edu.iastate.metnet.StripedTable.myColorRenderer (implements javax.swing.table.TableCellRenderer)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • edu.iastate.metnet.ui.ChangePassword
            • edu.iastate.metnet.metaomgraph.chart.CustomSortDialog (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
            • edu.iastate.metnet.newgui.DataOpener
            • edu.iastate.metnet.newgui.EntityEditor
            • edu.iastate.metnet.metaomgraph.ImportListDialog (implements java.awt.event.ActionListener)
            • edu.iastate.metnet.ui.LogonForm
            • edu.iastate.metnet.metaomgraph.NewProjectDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
            • edu.iastate.metnet.newgui.oldDataOpener
            • edu.iastate.metnet.ui.RegisterForm
            • edu.iastate.metnet.ui.RegisterForm2
            • edu.iastate.metnet.ui.WaitingDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • edu.iastate.metnet.dataManager.AboutWindow
            • edu.iastate.metnet.ui.AmorphousQueryForm
            • edu.iastate.biocyc.ui.AraCycForm
            • edu.iastate.biocyc.ui.BiocycForm
            • edu.iastate.metnet.birdseyeview.BirdsEyeViewWindow
            • edu.iastate.metnet.birdseyeview.BPathwaySelectionFrame
            • edu.iastate.metnet.ui.CategoryChooseForm
            • edu.iastate.metnet.ui.CategoryCreateForm
            • edu.iastate.metnet.ui.CategoryEditForm (implements javax.swing.event.TreeExpansionListener, javax.swing.event.TreeSelectionListener)
            • edu.iastate.metnet.ui.CategoryRenameForm
            • edu.iastate.metnet.ui.ClassEditForm
            • edu.iastate.reload.ui.CommentEditForm
            • edu.iastate.metnet.dataManager.DataManager
            • edu.iastate.reload.ui.DBSearchForm
            • edu.iastate.metnet.dataManager.DescriptionFrame (implements java.awt.event.ActionListener)
            • edu.iastate.metnet.admin.DirectForm
            • edu.iastate.metnet.ui.EntitySelector
            • edu.iastate.metnet.birdseyeview.ExploRaseExpFrame
            • edu.iastate.metnet.metaomgraph.ExploRaseFrame
            • edu.iastate.reload.ui.FirstForm
            • edu.iastate.metnet.ui.GroupManagerForm
            • fcmodeler.pathbinder.gui.HiddenLinkFrame
            • edu.iastate.metnet.ui.HistoryReportForm
            • edu.iastate.reload.ui.InteractionSearchForm
            • edu.iastate.metnet.ui.InteractionSelector
            • edu.iastate.metnet.launch.LaunchMetNet (implements java.awt.event.MouseListener)
            • edu.iastate.reload.ui.LiveEntitySearchForm
            • edu.iastate.metnet.birdseyeview.LoadWindow
            • edu.iastate.metnet.ui.LocusInformationForm
            • edu.iastate.metnet.ui.MainWindow2 (implements java.awt.event.ContainerListener, java.awt.event.KeyListener)
              • edu.iastate.metnet.newgui.MetNetGUI
            • edu.iastate.metnet.mapbuilder.MapbuilderHelpFrame
            • edu.iastate.metnet.ui.MemberManagerForm
            • edu.iastate.metnet.launch.MetNetAboutFrame
            • edu.iastate.reload.ui.NetworkEditForm
            • edu.iastate.metnet.ui.NodeSelectionForm (implements org.jgraph.event.GraphSelectionListener)
            • fcmodeler.pathbinder.updater.PathBinderUpdater
            • edu.iastate.metnet.ui.PathwayHighlightForm
            • edu.iastate.metnet.dataManager.PathwaySelectionFrame
            • edu.iastate.metnet.metaomgraph.PathwaySelectionFrame
            • edu.iastate.metnet.ui.PathwaySelector2
            • fcmodeler.pathbinder.gui.PbFrame (implements java.awt.event.ComponentListener)
            • fcmodeler.pathbinder.gui.PbViewer
            • edu.iastate.metnet.dataManager.PropsWindow
            • edu.iastate.jtm.assistant.PubMedAssistant
            • edu.iastate.jtm.assistant.QueryBuilder
            • edu.iastate.reload.ui.ReferenceEditForm
            • edu.iastate.metnet.ui.SearchDialog
            • edu.iastate.metnet.ui.SpeciesSelector
            • edu.iastate.metnet.ui.StructuralQueryForm (implements java.awt.event.ContainerListener, java.awt.event.KeyListener)
            • edu.iastate.reload.ui.SynonymEditForm
            • edu.iastate.metnet.ui.TrivialSelector (implements java.awt.event.ContainerListener, java.awt.event.KeyListener)
            • edu.iastate.metnet.ui.VersionEditor
            • edu.iastate.metnet.ui.VersionSaver (implements org.jgraph.event.GraphSelectionListener)
        • edu.iastate.jtm.gui.SplashWindow
  • edu.iastate.metnet.metaomgraph.ComponentToImage
  • javax.swing.plaf.ComponentUI
    • org.jgraph.plaf.GraphUI
      • org.jgraph.plaf.basic.BasicGraphUI (implements java.io.Serializable)
        • edu.iastate.metnet.graphmodel.JMetaphorGraph.EditorGraphUI
  • edu.iastate.metnet.model.CompositionBlockunit
  • edu.iastate.metnet.aracyc.ConsoleApplication
    • edu.iastate.metnet.aracyc.GraphStatistics
  • edu.iastate.metnet.utils.ContextFactory
  • edu.iastate.jtm.assistant.Controller
  • edu.iastate.metnet.metaomgraph.CorrelationCalc
  • edu.iastate.metnet.metaomgraph.chart.CustomSortDialog.CustomSortObject (implements java.io.Serializable, edu.iastate.metnet.metaomgraph.XMLizable)
  • edu.iastate.metnet.ui.CytoMetnet
  • edu.iastate.metnet.hivemindService.CytoscapeHMService
  • edu.iastate.metnet.birdseyeview.db.Database
  • edu.iastate.metnet.metaomgraph.chart.DataSorter
  • org.jgraph.graph.DefaultEdge.LoopRouting (implements org.jgraph.graph.Edge.Routing)
    • edu.iastate.reload.ui.JGraphParallelEdgeRouter
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • fcmodeler.pathbinder.echo
  • edu.iastate.jtm.gui.DefaultMonitorable (implements edu.iastate.jtm.gui.Monitorable)
    • edu.iastate.jtm.jmed.CitationManager
      • edu.iastate.jtm.assistant.BibTex
      • edu.iastate.jtm.assistant.EndNote
      • edu.iastate.jtm.assistant.ProCite
    • fcmodeler.pathbinder.DictionaryBuilder
    • edu.iastate.jtm.EntityFinder
      • edu.iastate.jtm.assistant.Highlighter
      • fcmodeler.pathbinder.MedCrawler
    • fcmodeler.pathbinder.FilterUpdater
    • fcmodeler.pathbinder.InteractUpdate
    • fcmodeler.pathbinder.PmidFilter
    • edu.iastate.jtm.util.ProcessWrapper
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • org.jgraph.graph.DefaultGraphCell (implements java.lang.Cloneable, org.jgraph.graph.GraphCell)
      • edu.iastate.metnet.graphmodel.MultiNodeCell
    • edu.iastate.metnet.metaomgraph.ExtendedInfoTree
    • edu.iastate.metnet.metaomgraph.ListTree.DraggableNode (implements java.io.Serializable, java.awt.datatransfer.Transferable)
    • fcmodeler.pathbinder.gui.LocationNode
    • edu.iastate.jtm.jmed.Query.Term
      • edu.iastate.jtm.jmed.Query.CompositeTerm
      • edu.iastate.jtm.jmed.Query.SimpleTerm
    • edu.iastate.metnet.model.XMLMutableTreeNode
    • edu.iastate.jtm.gui.XmlTreeNode
  • javax.swing.tree.DefaultTreeCellEditor (implements java.awt.event.ActionListener, javax.swing.tree.TreeCellEditor, javax.swing.event.TreeSelectionListener)
    • edu.iastate.jtm.assistant.QueryTreeCellEditor
  • javax.swing.tree.DefaultTreeModel (implements java.io.Serializable, javax.swing.tree.TreeModel)
    • edu.iastate.jtm.jmed.Query
    • edu.iastate.jtm.gui.XmlTreeModel
  • edu.iastate.metnet.utils.DesEncrypter
  • edu.iastate.metnet.model.DisplayObject
  • edu.iastate.metnet.model.DomainObjectListModel
    • edu.iastate.metnet.model.CodelocationListModel
  • edu.iastate.metnet.utils.DummyPath
  • edu.iastate.jtm.DuplicationChecker
  • edu.iastate.metnet.soft.Entity
    • edu.iastate.metnet.soft.Platform
    • edu.iastate.metnet.soft.Sample
    • edu.iastate.metnet.soft.Series
  • fcmodeler.pathbinder.Entity (implements java.lang.Comparable<T>)
  • edu.iastate.metnet.hibernate.EntityabbreviationKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.EntitycommentKey (implements java.io.Serializable)
  • edu.iastate.jtm.EntityFinder.Hit
  • edu.iastate.biocyc.ui.EntityIdNode (implements java.io.Serializable)
  • edu.iastate.metnet.datamodel.EntityImpl (implements edu.iastate.metnet.datamodel.Entity)
    • edu.iastate.metnet.datamodel.db.GeneImpl (implements edu.iastate.metnet.datamodel.db.Gene)
  • fcmodeler.pathbinder.gui.EntityPanel.EntityScore (implements java.lang.Comparable<T>)
  • fcmodeler.pathbinder.gui.EntityPanel.InteractionScore
  • edu.iastate.metnet.model.EntityPart
  • edu.iastate.metnet.hibernate.EntityrefKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.EntitysynonymKey (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.EntitywithcontextKey (implements java.io.Serializable)
  • edu.iastate.jtm.jmed.Entrez
  • edu.iastate.metnet.db.Environment
  • edu.iastate.jtm.jmed.EUtility
    • edu.iastate.jtm.jmed.EFetch
    • edu.iastate.jtm.jmed.ELink
    • edu.iastate.jtm.jmed.EPost
    • edu.iastate.jtm.jmed.ESearch
  • java.util.EventObject (implements java.io.Serializable)
    • edu.iastate.metnet.event.CompositionGraphModelChangedEvent
  • edu.iastate.metnet.birdseyeview.ExperimentComboBoxListener (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.metaomgraph.ExploRaseBoxHandler (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.birdseyeview.ExploRaseBoxHandler (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.hivemindService.ExploRaseExportObj
  • edu.iastate.metnet.metaomgraph.ExploRaseSubmitListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.ExploRaseSubmitListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.hivemindService.ExportJungPathway
  • edu.iastate.metnet.hivemindService.ExportToBirdsEyeView
  • edu.iastate.metnet.hivemindService.ExportToExploRase
  • edu.iastate.metnet.hivemindService.ExportToMetaOmGraphImpl (implements edu.iastate.metnet.hivemindService.ExportToMetaOmGraph)
  • edu.iastate.metnet.metaomgraph.ExtendedInfoTree.InfoNode
  • edu.iastate.metnet.hibernate.ExternaldbKey (implements java.io.Serializable)
  • java.io.File (implements java.lang.Comparable<T>, java.io.Serializable)
    • edu.iastate.metnet.soft.SOFTFile
  • edu.iastate.metnet.dataManager.FileData
  • javax.swing.filechooser.FileFilter
    • edu.iastate.metnet.dataManager.FileFilterImpl
    • edu.iastate.metnet.metaomgraph.GraphFileFilter
  • edu.iastate.jtm.util.FileSplitter
  • edu.iastate.metnet.dataManager.FilesTableMouseListener (implements java.awt.event.MouseListener)
  • fcmodeler.pathbinder.FilterEntry (implements java.lang.Comparable<T>)
  • edu.iastate.metnet.metaomgraph.utils.FlatFileConverter
  • java.text.Format (implements java.lang.Cloneable, java.io.Serializable)
    • java.text.NumberFormat
      • edu.iastate.metnet.metaomgraph.chart.MetaOmChartPanel.ExperimentFormat
  • com.enterprisedt.net.ftp.FTPClient (implements com.enterprisedt.net.ftp.FTPClientInterface)
    • fcmodeler.pathbinder.MedLeaseClient (implements com.enterprisedt.net.ftp.FTPProgressMonitor, edu.iastate.jtm.gui.Monitorable)
  • edu.iastate.metnet.birdseyeview.GeneColor
  • edu.iastate.metnet.metaomgraph.GeneList (implements java.io.Serializable, java.awt.datatransfer.Transferable)
  • edu.iastate.metnet.birdseyeview.GenePanelLayout (implements java.awt.LayoutManager)
  • edu.iastate.metnet.birdseyeview.GenePanelListener (implements java.awt.event.MouseListener)
  • edu.iastate.metnet.birdseyeview.goview.GenePanelListener (implements java.awt.event.MouseListener)
  • edu.iastate.metnet.hivetest.GobiNodeImpl (implements edu.iastate.metnet.hiveface.GobiNode)
  • edu.iastate.metnet.export.GobiNodeImpl (implements edu.iastate.metnet.hiveface.GobiNode)
  • edu.iastate.metnet.birdseyeview.GoDownListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.goview.GoLevel
  • edu.iastate.metnet.birdseyeview.goview.GoNode
  • edu.iastate.metnet.birdseyeview.goview.GoNodeMouseListener (implements java.awt.event.MouseListener)
  • edu.iastate.jtm.assistant.Google
  • edu.iastate.jtm.assistant.GoogleScholar
  • edu.iastate.metnet.birdseyeview.goview.GoTerm
  • edu.iastate.metnet.dao.GoTermID (implements java.io.Serializable)
  • edu.iastate.metnet.export.GoTermID (implements java.io.Serializable)
  • edu.iastate.metnet.birdseyeview.GoUpListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.export.GraphExporterImpl (implements edu.iastate.metnet.hiveface.GraphExporter)
  • org.jgraph.graph.GraphLayoutCache (implements org.jgraph.graph.CellMapper, java.io.Serializable)
    • edu.iastate.reload.ui.OverviewPanel.ViewRedirector
    • edu.iastate.metnet.ui.OverviewPanel.ViewRedirector
  • edu.iastate.metnet.graphmodel.GraphValidity
  • edu.iastate.metnet.hibernate.GroupMemberKey (implements java.io.Serializable)
  • edu.iastate.metnet.dao.GroupObject (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.GroupShareKey (implements java.io.Serializable)
  • edu.iastate.metnet.utils.GUID
  • edu.iastate.metnet.actions.HelpButtonAction (implements java.awt.event.ActionListener)
  • edu.iastate.reload.ui.HelpResource
  • edu.iastate.metnet.ui.HelpWindow.HelpPage
  • edu.iastate.metnet.utils.HexUtil
  • edu.iastate.metnet.test.HibernateTest
  • fcmodeler.pathbinder.HiddenLink
  • fcmodeler.pathbinder.HiddenLink.Link
  • fcmodeler.pathbinder.HintParse
  • edu.iastate.metnet.dao.HistoryBlockunitImpl (implements edu.iastate.metnet.dao.HistoryBlockunit, java.io.Serializable)
  • edu.iastate.metnet.dao.HistoryInformation (implements java.io.Serializable)
  • edu.iastate.jtm.gui.IconLib
  • edu.iastate.metnet.metaomgraph.chart.InfoPopupManager (implements org.jfree.chart.event.ChartProgressListener, java.awt.event.ComponentListener, javax.swing.event.InternalFrameListener)
  • edu.iastate.jtm.util.InfoTheory
  • edu.iastate.metnet.graphmodel.InputEncoder
  • edu.iastate.metnet.dao.InputNode (implements java.io.Serializable)
  • edu.iastate.metnet.aracyc.InteractionFix
  • edu.iastate.metnet.mapbuilder.InteractionInfo
  • edu.iastate.metnet.dao.InteractionInformation (implements java.io.Serializable)
  • edu.iastate.metnet.dao.InteractionObject (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.InteractionpartsKey (implements java.io.Serializable)
  • edu.iastate.metnet.dao.InteractionStructure (implements java.io.Serializable)
  • edu.iastate.metnet.model.IntermediumEntityInformation
  • edu.iastate.jtm.util.JarResources
  • edu.iastate.metnet.graphmodel.JGraphEncoder
  • org.jgraph.layout.JGraphLayoutAlgorithm
    • edu.iastate.metnet.graphmodel.CategoryLayoutAlgorithm
    • edu.iastate.metnet.graphmodel.EditingLayoutAlgorithm
    • edu.iastate.metnet.graphmodel.HierachyLayoutAlgorithm
    • edu.iastate.metnet.graphmodel.InputLayoutAlgorithm
    • edu.iastate.metnet.graphmodel.MyTreeAlgorithm
    • edu.iastate.metnet.graphmodel.RandomLayoutAlgorithm
    • edu.iastate.metnet.graphmodel.VersionyLayoutAlgorithm
  • edu.iastate.jtm.gui.KeyCoder
  • edu.iastate.metnet.birdseyeview.LabelsButtonListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.actions.LaunchApplicationListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.hivemindService.Launcher
  • edu.iastate.metnet.birdseyeview.LegendPanel.spinnerListener (implements javax.swing.event.ChangeListener)
  • edu.iastate.jtm.jmed.Limits
  • edu.iastate.metnet.launch.List
    • edu.iastate.metnet.launch.Queue
  • com.jgoodies.binding.extras.ListModelHolder (implements javax.swing.ListModel, com.jgoodies.binding.value.ValueModel)
  • edu.iastate.metnet.launch.ListNode
  • edu.iastate.metnet.metaomgraph.ListTransferHandler.DraggableRows (implements java.awt.datatransfer.Transferable)
  • edu.iastate.metnet.birdseyeview.LoadButtonListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.LoadCancelButtonListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.LoadController
  • edu.iastate.metnet.birdseyeview.Loader
  • edu.iastate.metnet.birdseyeview.LoadFileButtonListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.LoadOkButtonListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.MainExperimentComboBoxListener (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.launch.MainMenuListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.mapbuilder.MapBuilderPanel.BuildListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.utils.MD5Digest
  • edu.iastate.jtm.jmed.MedCitation
  • edu.iastate.metnet.dataManager.MenuActionListener (implements java.awt.event.ActionListener)
  • edu.iastate.jtm.jmed.MeshDescriptor
  • edu.iastate.metnet.export.MetaboliteObjectImpl (implements edu.iastate.metnet.hiveface.MetaboliteObject, java.io.Serializable)
  • fcmodeler.pathbinder.MetaCrawler
  • javax.swing.plaf.metal.MetalTheme
    • javax.swing.plaf.metal.DefaultMetalTheme
      • edu.iastate.metnet.MetNetMetalTheme
      • javax.swing.plaf.metal.OceanTheme
        • edu.iastate.metnet.MetNetOceanTheme
      • com.jgoodies.plaf.plastic.PlasticTheme
        • com.jgoodies.plaf.plastic.theme.SkyBluer
          • com.jgoodies.plaf.plastic.theme.SkyBluerTahoma
            • edu.iastate.metnet.ui.Desert
            • edu.iastate.metnet.ui.Oasis
      • edu.iastate.metnet.ui.PropertiesMetalTheme
    • edu.iastate.reload.skin.DefaultMetalThemeX
      • edu.iastate.reload.skin.MetNetMetalTheme
      • edu.iastate.reload.skin.OceanThemeX
        • edu.iastate.reload.skin.MetNetOceanTheme
  • javax.swing.plaf.metal.MetalUtils
  • edu.iastate.reload.skin.MetalUtilsX
  • edu.iastate.metnet.metaomgraph.MetaOmAnalyzer
  • edu.iastate.metnet.metaomgraph.MetaOmGraph (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.metaomgraph.MetaOmHelpListener (implements java.awt.event.ActionListener, javax.swing.event.HyperlinkListener, javax.swing.event.TreeSelectionListener)
  • edu.iastate.metnet.metaomgraph.MetaOmProject
  • edu.iastate.metnet.metaomgraph.MetaOmTablePanel.ListNameComparator (implements java.util.Comparator<T>)
  • edu.iastate.metnet.metaomgraph.MetaOmTips (implements javax.swing.event.HyperlinkListener, com.l2fprod.common.swing.TipModel)
  • edu.iastate.metnet.metaomgraph.MetaOmTips.MetaOmShowTipsChoice (implements com.l2fprod.common.swing.JTipOfTheDay.ShowOnStartupChoice, java.io.Serializable)
  • edu.iastate.metnet.graphmodel.MetaphorTypeInformation (implements java.io.Serializable)
  • edu.iastate.metnet.dao.MetnetBlockUnit (implements edu.iastate.metnet.dao.IMetnetBlockUnit, java.io.Serializable)
    • edu.iastate.metnet.dao.MetnetInteraction
    • edu.iastate.metnet.dao.MetnetLiveEntity
    • edu.iastate.metnet.dao.MetnetPathway
  • edu.iastate.metnet.MetNetLAF
  • edu.iastate.reload.skin.MetNetLAF
  • edu.iastate.metnet.MetNetLAFTest
  • com.jgoodies.binding.beans.Model (implements com.jgoodies.binding.beans.Observable, java.io.Serializable)
    • com.jgoodies.binding.extras.ChangeTracker
  • edu.iastate.reload.ui.ModelListerner (implements org.jgraph.event.GraphModelListener)
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • edu.iastate.metnet.metaomgraph.test.ColorPicker (implements java.awt.event.KeyListener, java.awt.event.MouseMotionListener)
  • edu.iastate.metnet.dao.MultiPathwayGraphImpl (implements edu.iastate.metnet.dao.MultiPathwayGraph, java.io.Serializable)
  • fcmodeler.MyClass
  • edu.iastate.metnet.utils.MyFacadeFactory
  • edu.iastate.metnet.interfaces.MyFacadeUtil
  • edu.iastate.metnet.graphmodel.MyJGraphModelAdapter.DefaultCellFactory (implements edu.iastate.metnet.graphmodel.MyJGraphModelAdapter.ICellFactory, java.io.Serializable)
  • edu.iastate.metnet.utils.MyMetnetServiceFactory
  • edu.iastate.metnet.interfaces.MyMetnetServiceUtil
  • edu.iastate.metnet.utils.MyPaperFactory
  • edu.iastate.metnet.interfaces.MyPaperUtil
  • edu.iastate.metnet.export.MyPathwayGraph (implements java.io.Serializable)
  • edu.iastate.metnet.analysis.MySolver
  • edu.iastate.jtm.util.MySqlConnector
  • edu.iastate.metnet.graphmodel.MyTreeAlgorithm.PolyLine
  • edu.iastate.metnet.graphmodel.MyTreeAlgorithm.TreeNode
  • edu.iastate.metnet.dao.MyVersionGraph (implements java.io.Serializable)
  • edu.iastate.metnet.dao.MyVersionNode (implements java.io.Serializable)
  • edu.iastate.metnet.utils.MyXmlRpcClientFactory
  • edu.iastate.metnet.dao.NameSource (implements java.io.Serializable)
  • edu.iastate.metnet.graphmodel.NetworkEditHelper
  • edu.iastate.metnet.graphmodel.NetworkEncoder
  • edu.iastate.metnet.mapbuilder.NodeInfo
  • edu.iastate.metnet.controller.NodeSelectionController
  • edu.iastate.metnet.model.NodeSelectionModel
  • java.lang.Number (implements java.io.Serializable)
    • edu.iastate.metnet.metaomgraph.CorrelationValue (implements java.lang.Comparable<T>)
    • edu.iastate.metnet.metaomgraph.SortableData (implements java.lang.Comparable<T>)
  • java.util.Observable
    • edu.iastate.metnet.model.EntityConfidenceObservable
  • edu.iastate.reload.ui.OverviewPanel.PannerViewfinder (implements javax.swing.event.ChangeListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
  • edu.iastate.metnet.ui.OverviewPanel.PannerViewfinder (implements javax.swing.event.ChangeListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
  • edu.iastate.metnet.birdseyeview.cellview.PanelLocationsFactory
  • edu.iastate.jtm.util.ParenFinder
  • edu.iastate.jtm.util.ParenParser
  • fcmodeler.pathbinder.PathBinder
  • edu.iastate.metnet.launch.Pathway
  • edu.iastate.metnet.birdseyeview.pathwayview.Pathway
  • edu.iastate.metnet.dao.PathwayA (implements java.io.Serializable)
  • edu.iastate.metnet.dao.PathwayAlignmentImpl (implements edu.iastate.metnet.dao.PathwayAlignment)
  • edu.iastate.metnet.export.PathwayCategoryNodeImpl (implements edu.iastate.metnet.hiveface.PathwayCategoryNode)
  • edu.iastate.metnet.dao.PathwayGraphImpl (implements edu.iastate.metnet.dao.PathwayGraph, java.io.Serializable)
  • edu.iastate.metnet.export.PathwayInfoImpl (implements edu.iastate.metnet.hiveface.PathwayInfo, java.io.Serializable)
  • edu.iastate.metnet.dao.PathwayObject (implements java.io.Serializable)
  • edu.iastate.metnet.model.PathwayObjectChoice (implements java.io.Serializable)
  • edu.iastate.metnet.hibernate.PathwaypartsKey (implements java.io.Serializable)
  • edu.iastate.metnet.hivemindService.PathwayService
  • edu.iastate.metnet.dataManager.PathwaySubmitListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.metaomgraph.PathwaySubmitListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.PathwaySubmitListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.birdseyeview.PathwayTreeNode
  • edu.iastate.biocyc.ui.PbidNode (implements java.io.Serializable)
  • fcmodeler.pathbinder.PbSentence (implements java.lang.Comparable<T>)
  • edu.iastate.metnet.ui.PlatformService
  • edu.iastate.jtm.PluralDetector
  • java.awt.Polygon (implements java.io.Serializable, java.awt.Shape)
    • edu.iastate.metnet.metaomgraph.PolygonPanel.BouncingPolygon
  • edu.iastate.jtm.PorterStemmer (implements edu.iastate.jtm.Stemmer)
  • edu.iastate.metnet.dataManager.Properties
  • edu.iastate.metnet.birdseyeview.Protein
    • edu.iastate.metnet.birdseyeview.Polypeptide
    • edu.iastate.metnet.birdseyeview.ProteinComplex
  • edu.iastate.metnet.birdseyeview.PrototypeAnnotations
  • edu.iastate.jtm.jmed.PubMedFetcher
  • edu.iastate.jtm.jmed.PubMedQuerier
  • edu.iastate.jtm.jmed.PubMedSampler
  • edu.iastate.jtm.jmed.PubMedTimer
  • edu.iastate.jtm.jmed.Query.Field (implements java.io.Serializable)
  • edu.iastate.jtm.jmed.Query.Operator (implements java.io.Serializable)
  • edu.iastate.jtm.assistant.QueryBuilder.QueryTemplate
  • edu.iastate.jtm.jmed.QueryParser
  • edu.iastate.metnet.metaomgraph.RandomAccessFile (implements java.io.DataInput, java.io.DataOutput)
  • edu.iastate.metnet.soft.RandomAccessFile (implements java.io.DataInput, java.io.DataOutput)
  • edu.iastate.metnet.metaomgraph.chart.RangeMarker (implements java.io.Serializable)
  • edu.iastate.metnet.metaomgraph.chart.RangeSelector (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
  • edu.iastate.metnet.dao.ReferenceObject (implements java.io.Serializable)
  • edu.iastate.metnet.dao.RelationMap (implements java.io.Serializable)
  • edu.iastate.metnet.graphmodel.RelationObject
  • edu.iastate.jtm.util.RemoteControl (implements com.jcraft.jsch.UserInfo)
  • edu.iastate.metnet.hivemindService.RequestGene
  • edu.iastate.metnet.hivemindService.RequestGeneData
  • edu.iastate.metnet.mapbuilder.ResetButton (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.db.ResultSetAdapter
  • edu.iastate.metnet.db.ReturnCode
  • edu.iastate.metnet.model.RowEditorModel
  • edu.iastate.jtm.gui.RowHeaderTable.TableRowHeaderRenderer (implements javax.swing.ListCellRenderer)
  • edu.iastate.metnet.launch.RunCytoscape (implements cytoscape.init.CyInitParams)
  • edu.iastate.jtm.util.RunningBuffer
  • edu.iastate.metnet.birdseyeview.SaveButtonListener (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.SBMLExporter
  • edu.iastate.jtm.gui.ScreenUtil
  • edu.iastate.metnet.aracyc.ScriptSink
  • edu.iastate.metnet.hivemindService.SearchByPubMed
  • edu.iastate.metnet.ui.SearchDialog_btnAppply_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.SearchDialog_btnClose_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.mapbuilder.SelectAllButton (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.model.SelectedBlockunit
  • edu.iastate.reload.ui.SelectionListener (implements org.jgraph.event.GraphSelectionListener)
  • edu.iastate.metnet.ui.SelectionListener (implements org.jgraph.event.GraphSelectionListener)
  • edu.iastate.metnet.mapbuilder.SelectPathwayPanel.UpdateListingListener (implements java.awt.event.ActionListener)
  • edu.iastate.jtm.SentenceParser
  • fcmodeler.pathbinder.SentenceScorer
  • fcmodeler.pathbinder.SentenceService
  • edu.iastate.metnet.metaomgraph.ServiceTest
  • edu.iastate.metnet.hivemindService.SimpleGeneObj
  • edu.iastate.jtm.util.SlidingWindow
  • edu.iastate.jtm.util.SlidingWindow.Stride
  • edu.iastate.metnet.soft.SOFTParser
  • edu.iastate.metnet.dao.SoybeanHomology (implements java.io.Serializable)
  • edu.iastate.metnet.model.SpeciesChoice (implements java.io.Serializable)
  • com.jgoodies.binding.extras.SpinnerAdapterFactory
  • edu.iastate.jtm.gui.SpringUtilities
  • edu.iastate.jtm.jmed.StreamXMLParser
    • edu.iastate.jtm.jmed.MedlineParser
  • edu.iastate.metnet.test.StringTest
  • edu.iastate.metnet.ui.StructureQueryHelper
  • edu.iastate.jtm.gui.SwingWorker
  • edu.iastate.metnet.metaomgraph.SwingWorker
    • edu.iastate.metnet.metaomgraph.MetaOmGraph.NewProjectWorker
    • edu.iastate.metnet.metaomgraph.ScrollingTexturePanel.ColorFader
  • org.jdesktop.swingworker.SwingWorker<T,V> (implements java.util.concurrent.Future<V>, java.lang.Runnable)
    • edu.iastate.metnet.birdseyeview.BirdsEyeView.Task
  • edu.iastate.metnet.utils.SwingWorker
  • edu.iastate.metnet.ui.SynonymCandidate_btnApprove_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.SynonymCandidate_btnCheckAll_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.SynonymCandidate_btnExtractLimit_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.ui.SynonymCandidate_btnUncheckAll_actionAdapter (implements java.awt.event.ActionListener)
  • edu.iastate.metnet.dao.SynonymObject (implements java.io.Serializable)
  • edu.iastate.jtm.gui.TableMarker (implements edu.iastate.jtm.gui.MarkListener)
  • edu.iastate.jtm.gui.TableUtil
  • edu.iastate.metnet.dao.TairReferenceObject (implements java.io.Serializable)
  • java.lang.Thread (implements java.lang.Runnable)
    • edu.iastate.metnet.threads.AnnotationThread
    • edu.iastate.metnet.birdseyeview.BirdsEyeView.LoadAnnotation
    • edu.iastate.metnet.threads.DataThread
    • edu.iastate.metnet.threads.ExploRaseThread
    • edu.iastate.metnet.threads.PathwayGeneThread
  • EDU.oswego.cs.dl.util.concurrent.ThreadFactoryUser
    • edu.iastate.metnet.utils.SwingWorker2 (implements java.lang.Runnable)
      • edu.iastate.metnet.ui.BlockunitWorker
      • edu.iastate.metnet.ui.CompileWorker
      • edu.iastate.metnet.ui.InteractionWorker
      • edu.iastate.metnet.test.MyFacadeTest.FacadeWorker
      • edu.iastate.metnet.test.MyPaperTest.PaperWorker
      • edu.iastate.metnet.ui.PathwayObjectWorker
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • edu.iastate.metnet.birdseyeview.BirdsEyeViewException
      • edu.iastate.metnet.birdseyeview.FieldNotFoundException
      • edu.iastate.jtm.util.ProcessWrapper.CmdNotFoundException
      • java.lang.RuntimeException
        • edu.iastate.metnet.ui.CategoryException
        • edu.iastate.metnet.launch.EmptyListException
        • edu.iastate.metnet.dao.NoSuchNodeException
        • edu.iastate.metnet.export.NoSuchNodeException
      • edu.iastate.metnet.soft.SOFTException
  • edu.iastate.jtm.TokenAnalyzer
  • edu.iastate.jtm.util.TokenProcessor
  • javax.swing.TransferHandler (implements java.io.Serializable)
    • edu.iastate.metnet.metaomgraph.ListTransferHandler
  • edu.iastate.metnet.model.TreeModelSupport
    • edu.iastate.metnet.model.AbstractTreeModel (implements javax.swing.tree.TreeModel)
      • edu.iastate.metnet.model.CategoryTreeModel
  • edu.iastate.metnet.metaomgraph.TreeSearcher
  • edu.iastate.metnet.metaomgraph.TreeSearcher.Query (implements java.io.Serializable, edu.iastate.metnet.metaomgraph.XMLizable)
  • edu.iastate.metnet.metaomgraph.chart.TreeSearchQueryConstructionPanel.QuerySet (implements java.io.Serializable, edu.iastate.metnet.metaomgraph.XMLizable)
  • edu.iastate.jtm.gui.TreeUtil
  • edu.iastate.jtm.dic.Trie
  • edu.iastate.metnet.dao.TrivialMetabolite (implements java.io.Serializable)
  • edu.iastate.metnet.event.UISwitchListener (implements java.beans.PropertyChangeListener)
  • edu.iastate.jtm.jmed.UmlsQueryClient
  • edu.iastate.jtm.jmed.UmlsSocketClient
  • javax.swing.undo.UndoableEditSupport
    • org.jgraph.graph.DefaultGraphModel (implements org.jgraph.graph.GraphModel, java.io.Serializable)
      • edu.iastate.metnet.graphmodel.MyJGraphModelAdapter
  • edu.iastate.metnet.metaomgraph.utils.Utils
  • edu.iastate.metnet.utils.Utils
  • fcmodeler.pathbinder.gui.VerbNode (implements javax.swing.tree.MutableTreeNode)
  • edu.iastate.metnet.graphmodel.VersionEncoder
  • edu.iastate.metnet.birdseyeview.ViewComboBoxListener (implements java.awt.event.ItemListener)
  • edu.iastate.metnet.birdseyeview.ViewFactory
  • edu.iastate.metnet.birdseyeview.ViewInfo
  • edu.iastate.jtm.util.VocabularyCounter
  • edu.iastate.jtm.util.VocabularyCounter.TfDf (implements java.lang.Comparable<T>)
  • java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
    • edu.iastate.metnet.metaomgraph.SimpleModalMaker
  • edu.iastate.jtm.util.WriterOpener
  • edu.iastate.metnet.mapbuilder.XMLBuilder
  • edu.iastate.metnet.aracyc.XMLRPCClient
  • edu.iastate.metnet.dao.ZEdge (implements java.io.Serializable)
  • edu.iastate.metnet.dao.ZVertex (implements java.io.Serializable)

Interface Hierarchy

• edu.iastate.metnet.dao.AlignmentAlgorithm
• edu.iastate.metnet.hiveface.AtGeneSearchObject
• edu.iastate.metnet.datamodel.Attribute<V>
  • edu.iastate.metnet.datamodel.attributes.Affy25kID
  • edu.iastate.metnet.datamodel.attributes.Affy8kID
  • edu.iastate.metnet.datamodel.attributes.AfgcID
  • edu.iastate.metnet.datamodel.attributes.AracycPathway
  • edu.iastate.metnet.datamodel.attributes.Comment
  • edu.iastate.metnet.datamodel.attributes.GeneName
  • edu.iastate.metnet.datamodel.attributes.GoBiologicalProcess
  • edu.iastate.metnet.datamodel.attributes.GoCellularComponent
  • edu.iastate.metnet.datamodel.attributes.GoMolecularFunction
  • edu.iastate.metnet.datamodel.attributes.Locusid
  • edu.iastate.metnet.datamodel.attributes.MetnetLocation
  • edu.iastate.metnet.datamodel.attributes.MetnetPathway
  • edu.iastate.metnet.datamodel.attributes.PredictedLocation
  • edu.iastate.metnet.datamodel.attributes.UniprotID
• edu.iastate.biocyc.dao.txt.BiocycElement
• edu.iastate.metnet.hiveface.BlockunitObject
• edu.iastate.metnet.metaomgraph.chart.ChartSelectionListener
• edu.iastate.jtm.assistant.CitationListener
• javax.ejb.EJBLocalHome
  • edu.iastate.metnet.interfaces.MyFacadeLocalHome
  • edu.iastate.metnet.interfaces.MyMetnetServiceLocalHome
• javax.ejb.EJBLocalObject
  • edu.iastate.metnet.interfaces.MyFacadeLocal
  • edu.iastate.metnet.interfaces.MyMetnetServiceLocal
• edu.iastate.metnet.datamodel.Entity
  • edu.iastate.metnet.datamodel.db.Gene
• edu.iastate.jtm.jmed.EUtility.Processor
• java.util.EventListener
  • edu.iastate.metnet.event.CompositionGraphModelChangedListener
• edu.iastate.metnet.hivemindService.ExportToMetaOmGraph
• edu.iastate.metnet.hiveface.GobiNode
• edu.iastate.metnet.hiveface.GraphExporter
• edu.iastate.jtm.gui.Highlightable
• edu.iastate.metnet.dao.HistoryBlockunit
• edu.iastate.metnet.aracyc.IAracycEntity
• edu.iastate.metnet.aracyc.IAracycEntityWithLocation
• edu.iastate.metnet.aracyc.IAracycFileReader
• edu.iastate.metnet.model.ICodePresentation
• edu.iastate.metnet.analysis.IExcelClient
• edu.iastate.metnet.analysis.IExcelSheet
• edu.iastate.metnet.graphmodel.IGraphMetaphor
• edu.iastate.metnet.graphmodel.IGraphProcessor
• edu.iastate.metnet.dao.IMetnetBlockUnit
• edu.iastate.metnet.db.IMetNETTable
• edu.iastate.metnet.ui.IMetnetWindow
• edu.iastate.metnet.model.IPlotData
• edu.iastate.metnet.analysis.IRClient
• edu.iastate.jtm.gui.Markable
• edu.iastate.jtm.gui.MarkListener
• edu.iastate.metnet.hiveface.MetaboliteObject
• edu.iastate.jtm.gui.Monitorable
• edu.iastate.metnet.dao.MultiPathwayGraph
• edu.iastate.metnet.graphmodel.MyJGraphModelAdapter.ICellFactory
• edu.iastate.metnet.hiveface.PathwayCategoryNode
• edu.iastate.metnet.dao.PathwayGraph
• edu.iastate.metnet.hiveface.PathwayInfo
• edu.iastate.jtm.util.ProcessListener
• edu.iastate.jtm.util.ProgressMonitor
• edu.iastate.jtm.assistant.QueryConsumer
• edu.iastate.jtm.assistant.QueryListener
• edu.iastate.jtm.util.Queue
• edu.iastate.jtm.util.QueueListener
• java.rmi.Remote
  • javax.ejb.EJBHome
    • edu.iastate.metnet.interfaces.MyFacadeHome
    • edu.iastate.metnet.interfaces.MyMetnetServiceHome
    • edu.iastate.metnet.interfaces.MyPaperHome
  • javax.ejb.EJBObject
    • edu.iastate.metnet.interfaces.MyFacade
    • edu.iastate.metnet.interfaces.MyMetnetService
    • edu.iastate.metnet.interfaces.MyPaper
  • edu.iastate.metnet.interfaces.MyFacade
  • edu.iastate.metnet.interfaces.MyFacadeHome
  • edu.iastate.metnet.interfaces.MyMetnetService
  • edu.iastate.metnet.interfaces.MyMetnetServiceHome
  • edu.iastate.metnet.interfaces.MyPaper
  • edu.iastate.metnet.interfaces.MyPaperHome
• edu.iastate.jtm.util.RemoteReceiver
• java.io.Serializable
  • edu.iastate.metnet.dao.MultiPathwayElementNode
  • edu.iastate.metnet.dao.PathwayAlignment
  • edu.iastate.metnet.dao.PathwayElementNode
• edu.iastate.jtm.Stemmer
• edu.iastate.metnet.hiveface.TairReference
• edu.iastate.jtm.dic.TrieNode
• edu.iastate.metnet.graphmodel.VersionListener
• edu.iastate.metnet.metaomgraph.XMLizable